Table 1.
Whole-genome assembly (WGA) | Pruned WGAa | Anchored assembly | |
---|---|---|---|
Total length | 732.5 Mbp | 533.9 Mbp | 525.1 Mbp |
% Ns | 10.6% | 11.7% | 12.18% |
Number of sequences | 102 579 | 23 076 | 9 pseudo-Chrs |
N50 | 27.8 kbp | 44.6 kbp | 55.9 Mbp |
N20 | 76.1 kbp | 91.7 kbp | 62.7 Mbp |
N80 | 3.9 kbp | 19.5 kbp | 44.1 Mbp |
The WGA is deposited in NCBI, accession number GCA_003016355. Anchoring is available in AGP format, together with the raw reads, in the Bioproject PRJNA437375.
Ns, ambiguous nucleotides; N50, N20, and N80, sequence length of the shortest contig at 50, 20, and 80% of the total genome length.
aSequences without genes and under 10 kbp have been removed.