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. 2019 Dec 5;9(23):e3443. doi: 10.21769/BioProtoc.3443

Table 1. Primers used to prepare segment-specific fluorescent probes.

Name Primer sequence Size Segment
NV C-297 F ATGGGTCTGAAATATTTCTC 510nt C
NV C-806 R TTAATTAATTACAATCTCC
M ORF For2 GCTGCGTATCAAGACGAC 268nt M
M ORF Rev2 TTCTAGCATCCCAATTCC
N ORF For TGGCAGATTGGTTTTCTAGT 450nt N
N ORF Rev TTCTGAGTGAATGTACAATAAACATTT
R ORF For ACATTAAATAATCCTCTCTCTCCTA 810nt R
R ORF Rev CCTATCATCACTAAACATGCC
S ORF For AAATGGTGAGCAATTGGAA 350nt S
S ORF Rev GCCTATGATAGTAATCATATCTTGACA
U1 ORF For TTGGTCGATTATTTGTTGGTT 455nt U1
U1 ORF Rev AATATCTCATTAGCATTAATTACATTTGAA
U2 ORF For TTATGGATGCCGGCTTT 361nt U2
U2 ORF Rev CATGAAGTATTAGAATAACGAACTTGA
U4 ORF For AGCAGGTTATGGAATGTAGG 313nt U4
U4 ORF Rev ATAGATTCCCACAATCGCT
R1 For ACATTAAATAATCCTCTCTCTCCTA 282nt R
R1 Rev CTCTAAGCGTACTTGCAG
R2 For GAAGAAAGCTATTGCTACTTGG 406nt
R2 Rev CCTATCATCACTAAACATGCC
Nmys2-Red TTACATCATAAGTGCTGTAAGTATAATAAGGCACAACTAA 40 nt N
Nmys7-Green TTACATCATATTATACCAACTGTTGCTATCCCACAACTAA 40 nt N
Smys1-Red GTTTTTCATTAACTTCTCACTATAATAACTGCCCACAGTG 40 nt S
Smys8-Green GTTTTTCATTAATATAAGTCATAATTCCTGCTCCACAGTG 40 nt S