Table 1. Primers used to prepare segment-specific fluorescent probes.
(from Sicard et al., 2019 )
Name | Primer sequence | Size | Segment |
NV C-297 F | ATGGGTCTGAAATATTTCTC | 510nt | C |
NV C-806 R | TTAATTAATTACAATCTCC | ||
M ORF For2 | GCTGCGTATCAAGACGAC | 268nt | M |
M ORF Rev2 | TTCTAGCATCCCAATTCC | ||
N ORF For | TGGCAGATTGGTTTTCTAGT | 450nt | N |
N ORF Rev | TTCTGAGTGAATGTACAATAAACATTT | ||
R ORF For | ACATTAAATAATCCTCTCTCTCCTA | 810nt | R |
R ORF Rev | CCTATCATCACTAAACATGCC | ||
S ORF For | AAATGGTGAGCAATTGGAA | 350nt | S |
S ORF Rev | GCCTATGATAGTAATCATATCTTGACA | ||
U1 ORF For | TTGGTCGATTATTTGTTGGTT | 455nt | U1 |
U1 ORF Rev | AATATCTCATTAGCATTAATTACATTTGAA | ||
U2 ORF For | TTATGGATGCCGGCTTT | 361nt | U2 |
U2 ORF Rev | CATGAAGTATTAGAATAACGAACTTGA | ||
U4 ORF For | AGCAGGTTATGGAATGTAGG | 313nt | U4 |
U4 ORF Rev | ATAGATTCCCACAATCGCT | ||
R1 For | ACATTAAATAATCCTCTCTCTCCTA | 282nt | R |
R1 Rev | CTCTAAGCGTACTTGCAG | ||
R2 For | GAAGAAAGCTATTGCTACTTGG | 406nt | |
R2 Rev | CCTATCATCACTAAACATGCC | ||
Nmys2-Red | TTACATCATAAGTGCTGTAAGTATAATAAGGCACAACTAA | 40 nt | N |
Nmys7-Green | TTACATCATATTATACCAACTGTTGCTATCCCACAACTAA | 40 nt | N |
Smys1-Red | GTTTTTCATTAACTTCTCACTATAATAACTGCCCACAGTG | 40 nt | S |
Smys8-Green | GTTTTTCATTAATATAAGTCATAATTCCTGCTCCACAGTG | 40 nt | S |