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. Author manuscript; available in PMC: 2022 Jan 21.
Published in final edited form as: Cell Chem Biol. 2020 Sep 22;28(1):4–13.e17. doi: 10.1016/j.chembiol.2020.09.001

KEY RESOURCES TABLE.

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Rb pAb to MAX Abcam ab101271
Rb mAb to c-Myc Abcam ab32072
Rb mAB to DYKDDDDK Tag (D6W5B) Cell Signaling Technology Cat#14793S
Vinculin Rabbit Ab Cell Signaling Technology Cat#4650S
Rb mAb to c-Jun (60A8) Cell Signaling Technology Cat#9165S
Rb CDC25A Ab Cell Signaling Technology Cat#3652S
Rb mAb to CDK2 (78B2) Cell Signaling Technology Cat#2546S
Rb Anti-MAX Sigma-Aldrich HPA003474-100uL
GAPDH Ms McAb Proteintech Cat#60004-I-Ig
IRDye 680RD Goat anti-Mouse LI-COR 926-60870
IRDye 800CW Goat anti-Rabbit LI-COR 926-32211
B-Actin Rabbit mAb Cell Signaling Technology Cat#3700
Bacterial and Virus Strains
One Shot Stbl3 Chemically Competent E. coli Invitrogen Cat#C7373-03
Biological Samples
N/A
Chemicals, Peptides, and Recombinant Proteins
c-MYC human recombinant protein Origene Sku#TP301611
MAX human recombinant protein Origene AR09449PU-N
c-Jun human recombinant protein Origene AR09900PU-S
Invitrogen Hoechst 33342 dye Fisher Scientific Cat#H3570
Dimethyl Sulfoxide Fisher Chemical D128-500 (CAS 67-68-5)
Dulbecco’s Phosphate Buffered Saline (DPBS) Sigma-Aldrich D8537-500mL
c-MYC human recombinant protein Abcam Ab169901
MAX human recombinant protein Origene Sku#TP306812
Opti-MEM Reduced Serum Media ThermoFisher Scientific Cat#31985062
Lipofectamine 2000 Transfection Reagent ThermoFisher Scientific Cat#11668027
Iodoacetamide 98% ACROS Organics Cat# AC122270050
Iodoacetamide-13C2, 2-d2 Sigma-Aldrich Cat#721328
Urea Fisher Chemical U15-500 (CAS 57-13-6)
ProteaseMAX Surfactant, lyophilized Promega REF#V2072
Ammonium Bicarbonate Fisher Chemical A643-500 (CAS 1066-33-7)
TCEP 99% Strem Chemicals Cat#15-7400 (CAS 51805-45-9)
Formic Acid, 99.0+%, Optima LC/MS Grade Fisher Chemical A117-50 (CAS 64-18-6)
Sequencing Grade Modified Trypsin, Porcine Promega V511A
Covalent Ligand Library Enamine N/A
TAMRA-PEG4-Azide Click Chemistry Tools, Inc. AZ109-5
Laemmli SDS sample buffer, reducing (4x) Alfa Aesar J60015
Dharmafect I Dharmacon T-2001-02
Anti-DYKDDDDK G1 Affinity Resin GenScript Cat#L00432
3X (DYKDDDDK) Peptide APExBIO A6001
Tris(benzyltriazole methylamine) (TBTA) Sigma-Aldrich 678937 (CAS 510758-28-8)
Biotin-TEV-azide Weerapana et. al., 2010 N/A
Copper (II) Sulfate Sigma-Aldrich 451657
AcTEV Protease Invitrogen 12575-015
N-Hex-5-ynyl-2-iodo-acetamide (IAyne) Chess Gmbh 3187
Spectra Multicolor Broad Range Protein Ladder Thermo Scientific Prod#26634
Pierce Protease inhibitor Mini Tablets, EDTA-free Thermo Scientific Prod#A32955
5-TMRIA [Tetramethylrhodamine-5-Iodoacetamide Dihydroiodide] Setareh Biotech 6222
High Capacity Streptavidin Agarose Resin Thermo Scientific Ref#20357
Streptavidin Agarose Resin Thermo Scientific Ref#20349
Critical Commercial Assays
Abcam c-Myc Transcription Factor Assay Kit Abcam Ab207200
MYC Luciferase Reporter Qiagen CCS-012L
Q5 site-directed mutagenesis kit New England Biolabs E0554S
Dual-Glo Luciferase Promega E2920
Deposited Data
Experimental Models: Cell Lines
231MFP (Jessani et al., 2004) N/A
HEK293T/17 ATCC CRL-11268
MCF10A ATCC CRL-10317
Experimental Models: Organisms/Strains
Mouse model-- C.B-Igh-1b/IcrTac-Prkdcscid female mice Taconic CB17SC-F
Oligonucleotides
Primer: MYC C171Y forward ACT CCA CCT CCA GCT TGT ACC T This paper N/A
Primer: MYC C171Y reverse AGA CGC TGT GGC CGC This paper N/A
SASI_HS01_0015-0279/JUN (siJUN) 5’-CCUUCUAUGACGAUGCCCU[dt][dt]-3’ (sense) 5’- AGGGCAUCGUCAUAGAAGG-3’ (antisense) Sigma-Aldrich PDSIRNA2D SASI_HS01_0015-0279/
siRNA Fluorescent Universal Negative Control#1, 6-FAM Sigma-Aldrich SIC007
Recombinant DNA
Plasmid: pCMV6-Entry-cMYC (tag: c-term Myc-DDK) Origene RC201611
Plasmid: pCMV6-Entry-cMYC (C171Y mutant, tag: c-term Myc-DDK) This study N/A
Plasmid: pCMV6-Entry-eGFP (tag: c-term Myc-DDK) (Ward et al., 2019) N/A
Software and Algorithms
ImageJ (Schneider et al., 2012) https://imagej.nih.gov/ij/
IP2 proteomics pipeline 5.0.1 Integrated Proteomics Applications N/A
Other