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BSBolt Index Parameters.
| Option | Description |
|---|---|
| -G | Path to reference genome fasta file, fasta file should contain all contigs |
| -DB | Path to index directory, will create directory if folder does not exist |
| -MR | Path to bed file of mappable regions. Index will be built using a masked contig sequence. *We suggest to align to the entire genome to reduce false positives, hence, do not restrict the Genome Indexing to the target regions. |
