a) Left and middle panels: Components A
and B SAXS measurements (black curves) analyzed using the
Scatter program and SAXS profiles (magenta and blue for components
A and B model (shown in insets), respectively)
calculated using FOXS (Schneidman-Duhovny, D., Hammel, M., Tainer, J. A.
& Sali, A. FoXS, FoXSDock and MultiFoXS: Single-state and multi-state
structural modeling of proteins and their complexes based on SAXS profiles.
Nucleic Acids Res. 44, W424–W429 (2016)) and demonstrating excellent
agreement (A:
χ2=0.18, B:
χ2=0.20) and no
concentration dependence. Right panel: A+B mixture
SAXS measurement (black curves) and ASU scattering profile (brown). Bragg
peaks shown in the A+B SAXS data correlate with
the p6 symmetry model and spacing of 303 Angstrom (see Table S8) in close agreement
with TEM data and design model. The ASU model (top right panel corner)
comprises 12 monomers, 6 belonging to a single A component
(D3 hexamer in magenta) and 6 more belonging to 3 halves of
the B component (half of a D2 tetramer in blue).
b) Negative stain TEM assembly validation for the
components used for the SAXS experiments demonstrating the local expected
order. c) Array models with increasing size, increasing number
of ASUs, and 3D crystal model of stacked arrays as inferred from TEM
analysis shown in Extended data Figure
3d. Scattering profiles of array models consisting of an
increasing number of ASUs ([6, 9, 12, 15, 30, 36, 72, 108, 180] gray scale
intensity corresponds to ASUs #) and selected models are shown in
(c). A+B mixture SAXS measurement
profile (as shown in (a) right panel) is shown as a black curve
and circle markers demonstrating close agreement between the computational
design model of the p6 array and structures formed in solution.
e) Interpolation of measured arrays ASUs number and
dimensions (assuming circular arrays) based on the fit to the models’
SAXS profiles intensity difference between the first peak minimum and
maximum (see method) suggesting that in
solution (unsupported) the two components form 2D arrays which constitute
about 6,000 ASUs (tera-Da scale flat assembly) and are 1.8 μm in
diameter. f) SAXS profiles collected directly following the
mixture of array components at time points ranging from 30 sec to 15 min.
Each measurement was collected from a separate well to avoid accumulated
damage to the samples. It is notable that within the first 30 seconds
following components mixture at 10μM, distinctive Bragg peaks emerge.
Based on the computational model analysis (panels (e) and
(g)) these newly formed arrays constitute only a few
hexagons; however, this suggests that SAXS measurements enable a thorough
kinetics study and construction of phase diagrams of macroscale 2D binary
systems. Scale bars: (b) 500 nm