Antibodies |
|
CTCF |
EMD Millipore |
Cat# 07-729; RRID: AB_441965
|
Rabbit IgG, plasma |
EMD Millipore |
Cat# 401590; RRID: N/A |
STARD10 |
Santa Cruz Biotechnology |
Cat# sc-54336; RRID: AB_2197780
|
FCHSD2 |
Almeida-Souza et al., 2018 |
N/A |
ARAP1 |
Abcam |
Cat# ab99382; RRID: AB_10675661
|
α-TUBULIN |
Sigma-Aldrich |
Cat# T5168; RRID: AB_477579) |
|
Bacteria and virus strain |
|
Stbl3 competent cells |
Thermo Fisher Scientific |
Cat# C737303 |
10-beta competent cells |
New England Biolabs |
Cat# C30191
|
|
Biological samples |
|
Human islet samples |
Carrat et al., 2017 |
N/A |
|
Chemicals, peptides, and recombinant proteins |
|
3-Isobutyl-1-methylxanthine (IBMX) |
Sigma-Aldrich |
Cat# I5879 |
Foskolin |
Sigma-Aldrich |
Cat# F3917 |
Sodium Selenite |
Sigma-Aldrich |
Cat# S1382 |
Nicotinamide |
Sigma-Aldrich |
Cat# 481907 |
Paraformaldehyde |
Agar Scientific |
Cat# AGR1026 |
TRIzol |
Invitrogen |
Cat# 15596018 |
NP40 |
Sigma-Aldrich |
Cat# 13021 |
Proteinase inhibitor cocktail |
Sigma-Aldrich |
Cat# 04693132001 |
Albumin from Bovine Serum Fraction V |
Roche Diagnostics |
Cat# 10775835001 |
Human Transferrin |
Sigma-Aldrich |
Cat# T8158 |
ECM |
Sigma-Aldrich |
Cat# E1270 |
RNase A |
Thermo Fisher Scientific |
Cat# EN0531 |
Proteinase K |
Sigma-Aldrich |
Cat# AM2546 |
Dynabeads-Protein G |
Thermo Fisher Scientific |
Cat# 10003D |
Dynabeads-Protein A |
Thermo Fisher Scientific |
Cat# 10008D |
ATP, [γ-32P] |
Perkin Elmer |
Cat# NEG002A |
|
Critical commercial assay |
|
Dual-Luciferase Assay Reporter Assay System |
Promega |
Cat# E1910 |
Lipofectamine 2000 |
Thermos Fisher Scientific |
Cat# 11668025 |
Insulin Ultra-sensitive Assay Kit |
Cisbio Bioassays |
Cat# 62IN2PEH |
High-Capacity cDNA Reverse Transcription Kit |
Thermos Fisher Scientific |
Cat# 4368814 |
NE-PER™ Nuclear and Cytoplasmic extraction reagents |
Thermos Fisher Scientific |
Cat# 78833 |
Taqman™ Fast advanced master mix |
Thermos Fisher Scientific |
Cat# 4444553 |
Fast SYBR™ Green Master Mix |
Thermos Fisher Scientific |
Cat# 4385612 |
Phusion High fidelity DNA polymerase |
Thermos Fisher Scientific |
Cat# F530 |
T4 polynucleotide kinase |
New England BioLabs |
Cat# M0201S |
|
Experimental model: cell line |
|
HEK293T |
ATCC |
Cat# CRL_3216; RRID: CVCL_0063 |
EndoC-βH1 |
Univercell-Biosolutions |
Cat# N/A; RRID: CVCL_L909 |
|
Oligonucleotides |
|
VR_KO1: GACCCCTGTGAGCTCCTCGT |
This paper |
N/A |
VR_KO2: AGCGACCACCAGCTAGGTTT |
This paper |
N/A |
CBS1: GCTTGGGTGGGGGTGCAGCC |
This paper |
N/A |
CBS2: GGGCAGTCAAGGGCACAGGA |
This paper |
N/A |
CBS5: TGCAGAAGAATGGTCACTAG |
This paper |
N/A |
CBS7: AGTCTCGGGATCGACACGTG |
This paper |
N/A |
CBS8: CGGCCACAACCACTAGGGGG |
This paper |
N/A |
R2_KO1: GTGTCCTTCACAGTGGCGAT |
This paper |
N/A |
R2_KO2: ACTCCACCTTGGTATTACAC |
This paper |
N/A |
STARD10-1: AGAGGCCGCCAGCTTCTCCA |
This paper |
N/A |
STARD10-2: AGTCTTGGTCATCGGGCACC |
This paper |
N/A |
FCHSD2-1: GCATCATGCAGCCGCCGCCG |
This paper |
N/A |
FCHSD2-2: GCCCTTACCTTCCTCGGCGG |
This paper |
N/A |
ARAP1-1: TGGGGATGCTGCGCTATCGG |
This paper |
N/A |
ARAP1-2: TGCACCTGGAGCAGTACACG |
This paper |
N/A |
HBB_KO1: GCACCATAAGGGACATGATA |
This paper |
N/A |
HBB_KO2: TTTCCTTACTAAACCGACAT |
This paper |
N/A |
Inter_KO1: TTGAGGTTACATCATTCTAC |
This paper |
N/A |
Inter_KO2: AGTACCTAAAGAGACCCACA |
This paper |
N/A |
Scrabmble_1: GAACTCAACCAGAGGGCCAA |
This paper |
N/A |
Scrabmble_2: GGGAGGTGGCTTTAGGTTTT |
This paper |
N/A |
|
Recombinant DNA |
|
pMD2.G |
Didier Trono (https://www.epfl.ch/labs/tronolab/)
|
Cat# 12259; RRID: Addgene_12259 |
pSPAX2 |
Didier Trono (https://www.epfl.ch/labs/tronolab/)
|
Cat# 12260; RRID: Addgene_12260 |
BAC DNA |
bacpacresources.org |
RP11-101P7 |
pLenti-CRISPR-RIP-Cas9 |
Paul Gadue |
N/A |
pGL3-promoter |
Promega |
E1761 |
pRL-Renilla |
Promega |
E2231 |
pBlueScript II KS+ |
Stratagene/Agilent |
212207 |
|
Software |
|
GraphPad Prism 7 |
GraphPad Software |
RRID: SCR_002798
|
Illustrator |
Adobe |
RRID:SCR_010279
|
Photoshop |
Adobe |
RRID: SCR_014199
|