Table 2.
Prognostic value of the 9 dysregulated genes associated with the 3 common dysregulated pathways (EGFR, epidermal growth factor, β1-integrin and axon guidance) among the 4 types of data in obtained with KMplotter
Gene
|
Modulation in the 19 HCC papers
|
Probe-ID
|
HR
|
CI
|
Log-Rank P value
|
Median survival low (mo)
|
Median survival high (mo)
|
Estradiol gene modulation predicted by CTD
|
COL2A1 | Up | 1280 | 1.49 | 1.05-2.11 | 0.0229 | 61.7 | 54.1 | N/A |
FGA | Down | 2243 | 0.52 | 0.35-0.77 | 0.0009 | 49.7 | 70.5 | + |
FGG | Down | 2266 | 0.56 | 0.39-0.79 | 0.0009 | 38.3 | 70.5 | + |
LAMC1 | Up | 3915 | 1.43 | 0.98-2.09 | 0.06 | 56.5 | 38.3 | N/A |
CDK5 | Up | 1020 | 1.85 | 1.22-2.81 | 0.0035 | 81.9 | 6.2 | N/A |
EPHB1 | Down | 2047 | 0.72 | 0.048-1.08 | 0.1135 | 54.1 | 70.5 | N/A |
RPS6KA3 | Up | 6197 | 1.2 | 0.8-1.78 | 0.3743 | 54.1 | 56.5 | - |
EGFR | Down | 1956 | 0.61 | 0.43-0.89 | 0.0085 | 31 | 70.5 | + |
ITGB1 | Up | 3688 | 1.37 | 0.95-1.97 | 0.0924 | 82.9 | 49.7 | N/A |
CTD based prediction identified Estradiol to efficiently affect the expression of the 4/9 genes based on their hazard ratios values. HR: Hazard ratios; HCC: Hepatocellular carcinoma; CI: Confidence interval; N/A: Not applicable.