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. 2021 Jan 22;17(1):e1009092. doi: 10.1371/journal.pgen.1009092

Table 2. Bacterial strains used in this study.

Strain Genotype Reference
168 trpC2 Laboratory collection
BKE14130 trpC2 ΔdarB::erm [90]
GP94 trpC2 ΔcdaA::spc [21]
GP342 trpC2 amyE::(gltA-lacZ kan) [91]
GP987 trpC2 ΔdisA::tet [9]
GP991 trpC2 ΔcdaS::ermC ΔdisA::tet [9]
GP997 trpC2 ΔcdaA::cat [9]
GP1360 trpC2 ΔcdaS::spc This study
GP1361 trpC2 ΔcdaS::spc disA::tet GP1360 → GP987
GP1712 trpC2 ΔdarA::cat [47]
GP2181 trpC2 amyE::(P-kimA-RS-lacZ cat) pGP2912 → 168
GP2222 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet [21]
GP2223 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet nhaKS187F [21]
GP2224 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet aimA frameshift yqeGframeshift yqeVframeshift This study
GP2245 trpC2 ΔcdaS::ermC ΔdisA::tet ΔgltT::kan GP2248 → GP991
GP2248 trpC2 ΔgltT::kan This study
GP2259 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔgltT::kan ΔdisA::tet GP997 → GP2245
GP2413 trpC2 ΔcdaS::ermC ΔdisA::tet ΔdarA::cat GP1712 → GP991
GP2420 trpC2 ΔcdaS::ermC ΔdisA::tet ΔdarA::cat ΔcdaA::spc GP94 → GP2413
GP2777 trpC2 ΔcdaS::spc ΔdisA::tet ΔdarB::ermC BKE14130 → GP1361
GP2779 trpC2 ΔcdaS::spc ΔdisA::tet ΔdarB::ermC ΔcdaA::cat GP997 → GP2777
GP2785 trpC2 ΔyfkC::kan This study
GP2786 trpC2 ΔaimA::kan This study
GP2796 trpC2 ΔcdaS::spc disA::tet ΔyfkC::kan GP2785 → GP1361
GP2797 trpC2 ΔcdaS::spc disA::tet ΔyfkC::kan ΔcdaA::cat GP997 → GP2796
GP2798 trpC2 yfkCR42W kan This study
GP2813 trpC2 ΔcdaS::spc disA::tet yfkCR42W kan GP2798 → GP1361
GP2814 trpC2 ΔcdaS::spc disA::tet yfkCR42W kan ΔcdaA::cat GP997 → GP2813
GP2818 trpC2 ΔgltP::cat ΔaimA::kan GP2786 → GP2824
GP2824 trpC2 ΔgltP::cat This study
GP2825 trpC2 ΔgltT::kan ΔgltP::cat GP2824 → GP2248
GP2831 trpC2 ΔgltT::kan ΔaimA::phleo LFH → GP2248
GP2837 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet yfkCR42W plsCL48P fliPframeshift This study
GP2838 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet ndhFV237E, M241L, H242L, A243D, G244C, L245F ΔydcL-yddM yoaIframeshift This study
GP2839 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet fliKtruncated rpoBQ109P rbsBR175L This study
GP2840 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet plsCA61V ndhFframeshift ktrCframeshift sigDG88D [41]
GP2841 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet gudBdecrypt. accCH298Y This study
GP2842 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet nhaKS187F aimAframeshift This study
GP2845 trpC2 ΔcdaS::spc ΔdisA::tet ΔdarB::ermC ΔcdaA::cat ktrC (fs) kimAΔ354–364 darAV100A This study
GP2849 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet aimAframeshift ybcCK722L/I724F This study
GP2850 trpC2 ΔcdaS::spc disA::tet yfkCR42W kan ΔcdaA::cat accAA229V yerCT58K ypoPKTEYF 111 I This study
GP3010 trpC2 ΔcdaS::ermC ΔdisA::tet ΔdarA::cat ΔcdaA::spc ykoXK218STOP ktrCG11C yfkFG294S nusGT82K kimAΔG112 ccpAΔbp850-1005 (incl 24bp downstream) This study
GP3053 trpC2 ΔcdaS::ermC ΔdisA::tet ΔaimA::phleo GP2831 → GP991
GP3054 trpC2 ΔcdaS::ermC ΔdisA::tet ΔaimA::phleo ΔcdaA::cat GP997 → GP3053
GP3071 trpC2 ΔgltT::kan ΔaimA::phleo ΔgltP::cat GP2824 → GP2831
GP3077 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet ktrCframeshift aimA/glpQtruncation ybcCframeshift This study
GP3078 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet plsCA61V aimAT374M ktrBG313D sigDG88D This study
GP3079 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet yfkCR42W plsCL48P Δ(abh-kinC-ykqA-ktrC) hbsI32T ndoAG6S fliPframeshift This study
GP3093 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔgltT::kan ΔdisA::tet aimAL419P ndhFframeshift fliKframeshift This study
GP3094 trpC2 ΔcdaS::spc ΔdisA::tet ΔdarB::ermC ΔcdaA::cat ktrCframeshift kimAΔ354–364 codYG146V yonDD255H This study
GP3099 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet plsCL48P yfkCR42W fliPframeshift cotOI34F This study
GP3101 trpC2 ΔcdaS::ermC ΔdisA::tet ΔaimA::phleo ΔcdaA::cat fusAA579V yqeGframeshift This study
GP3102 trpC2 ΔcdaS::ermC ΔdisA::tet ΔaimA::phleo ΔcdaA::cat nhaKR486C sigAF281V mprAP397L fusAA579V This study
GP3103 trpC2 ΔcdaS::ermC ΔdisA::tet ΔaimA::phleo ΔcdaA::cat ktrCG14D topAK13N fusAA21T This study
GP3105 trpC2 ΔcdaS::spc disA::tet yfkCR42W kan ΔcdaA::cat aimAframeshift carBT257R mutLframeshift pksJL4386F This study
GP3464 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet plsCP110S flhAframeshift This study
GP3473 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet ndhFframeshift aimAframeshift gudB+ fliHframeshift yuiEG37V This study
GP3474 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet ndhF (fs) aimAframeshift ykpAframeshift ktrCframeshift fliKframeshift fliHsilent This study
GP3486 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet nhaKS187F aimAframeshift This study
GP3487 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet nhaKS187F aimAframeshift This study
GP3488 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet nhaKS187F aimAframeshift This study
GP3489 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet nhaKS187F aimAP279H This study
GP3490 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet nhaKS187F aimAI164N This study
GP3491 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet nhaKS187F aimAframeshift This study
GP3492 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet nhaKS187F aimAframeshift This study
GP3493 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet nhaKS187F aimAframeshift This study
GP3494 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet nhaKS187F aimAS106P This study
GP3495 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet nhaKS187F aimAN349K This study
GP3496 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet nhaKS187F aimAframeshift This study
GP3497 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet nhaKS187F aimAframeshift This study
GP3498 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet nhaKS187F aimAG70R This study
GP3499 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet nhaKS187F aimAInsertion after aa 226 (+VA) This study
GP3500 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet nhaKS187F aimAframeshift This study
GP3701 trpC2 ΔcdaA::cat ΔcdaS::ermC ΔdisA::tet nhaKS187F aimAframeshift This study
GP3702 trpC2 ΔcdaS::spc ΔdisA::tet ΔdarB::ermC ΔcdaA::cat ktrCframeshift kimAΔ354–364 darAframeshift This study
GP3703 trpC2 ΔcdaS::spc ΔdisA::tet ΔdarB::ermC ΔcdaA::cat ktrCframeshift kimAΔ354–364 darAframeshift This study