Table 1.
Gene sets enriched in the high DNA2 expression phenotype.
| Gene set name | NES | NOM p-val | FDR q-val |
|---|---|---|---|
| KEGG_CELL_CYCLE | 2.5039673 | 0 | 0 |
| KEGG_OOCYTE_MEIOSIS | 2.5004425 | 0 | 0 |
| KEGG_PROGESTERONE_MEDIATED_OOCYTE_MATURATION | 2.2601042 | 0 | 7.58E-04 |
| KEGG_BASAL_TRANSCRIPTION_FACTORS | 2.2252226 | 0 | 9.09E-04 |
| KEGG_RNA_DEGRADATION | 2.1981418 | 0 | 9.48E-04 |
| KEGG_SPLICEOSOME | 2.1785731 | 0 | 9.70E-04 |
| KEGG_DNA_REPLICATION | 2.1734233 | 0 | 8.31E-04 |
| KEGG_UBIQUITIN_MEDIATED_PROTEOLYSIS | 2.0631318 | 0.001960784 | 0.00491828 |
| KEGG_HOMOLOGOUS_RECOMBINATION | 2.061698 | 0 | 0.004467648 |
| KEGG_MISMATCH_REPAIR | 2.0155804 | 0 | 0.0078261 |
| KEGG_PYRIMIDINE_METABOLISM | 1.9722291 | 0 | 0.01263749 |
| KEGG_NUCLEOTIDE_EXCISION_REPAIR | 1.9698429 | 0.006237006 | 0.011753452 |
| KEGG_BASE_EXCISION_REPAIR | 1.9483268 | 0 | 0.013909859 |
| KEGG_P53_SIGNALING_PATHWAY | 1.9202973 | 0.002020202 | 0.017711155 |
| KEGG_AMINOACYL_TRNA_BIOSYNTHESIS | 1.91081 | 0.004264392 | 0.018946456 |
| KEGG_PURINE_METABOLISM | 1.9019014 | 0 | 0.019136654 |
| KEGG_CYSTEINE_AND_METHIONINE_METABOLISM | 1.8780447 | 0.004 | 0.022393785 |
| KEGG_LYSINE_DEGRADATION | 1.8466676 | 0.003944773 | 0.029533371 |
| KEGG_ONE_CARBON_POOL_BY_FOLATE | 1.8179266 | 0.008 | 0.035526518 |
NES: normalized enrichment score; NOM: nominal; FDR: false discovery rate. Gene sets with NOM p value <0.05 and FDR q value <0.05 were regarded as significantly enriched.