Table 3.
Genes up-regulated (> 1.5-fold change) in the mutant strain.
| Cluster | Gene | logFC | P value | Function |
|---|---|---|---|---|
| 1 | VP1448 | 1.8407 | 8.78E-05 | Anaerobic dimethyl sulfoxide reductase chain B |
| VP1449 | 2.346482 | 1.05E-15 | Anaerobic dimethyl sulfoxide reductase chain A | |
| VP1450 | 3.442818 | 2.86E-32 | hypothetical protein | |
| VP1451 | 1.867141 | 1.08E-11 | hypothetical protein | |
| VP1452 | 2.885653 | 2.51E-23 | Outer membrane protein ImpK/VasF | |
| VP1453 | 2.951883 | 4.14E-25 | Uncharacterized protein ImpJ/VasE | |
| VP1454 | 2.990298 | 1.34E-23 | Type VI secretion lipoprotein/VasD | |
| VP1455 | 2.964036 | 9.35E-25 | Uncharacterized protein ImpI/VasC | |
| VP1456 | 2.786061 | 6.17E-22 | hypothetical protein | |
| VP1457 | 3.429694 | 2.33E-25 | Uncharacterized protein ImpA | |
| VP1458 | 4.096527 | 7.38E-41 | IcmF-related protein | |
| VP1459 | 2.94613 | 3.15E-19 | Transcriptional regulator | |
| VP1460 | 1.667593 | 9.05E-10 | Uncharacterized protein ImpH/VasB | |
| VP1461 | 2.279961 | 2.73E-16 | Protein ImpG/VasA | |
| VP1462 | 2.129158 | 6.08E-14 | Uncharacterized protein | |
| VP1463 | 2.518079 | 6.29E-20 | Uncharacterized protein ImpC | |
| VP1464 | 2.393249 | 4.34E-16 | Uncharacterized protein ImpB | |
| VP1465 | 2.476941 | 1.97E-19 | Uncharacterized protein ImpA | |
| VP1466 | 2.440396 | 6.30E-19 | Serine/threonine protein kinase | |
| VP1467 | 1.832535 | 6.93E-12 | Hcp | |
| VP1468 | 2.980778 | 3.95E-25 | ClpB-like protein | |
| VP1469 | 2.628548 | 1.12E-17 | sigma-54-dependent transcriptional regulator | |
| VP1470 | 1.536542 | 0.003818 | Uncharacterized peptidase YqjE | |
| 2 | VP1740 | 2.30968 | 1.75E-15 | FIG01199787: hypothetical protein |
| VP1741 | 2.394921 | 2.28E-17 | Chromosome segregation ATPase | |
| VP1742 | 2.438215 | 1.55E-05 | hypothetical protein | |
| 3 | VP1043 | 1.70837 | 3.81E-10 | hypothetical protein |
| VP1044 | 1.889812 | 7.64E-08 | hypothetical protein | |
| VP1045 | 1.791027 | 1.62E-11 | Chromosome partition protein MukB | |
| VP1046 | 1.945746 | 3.68E-12 | Chromosome partition protein MukE | |
| VP1047 | 2.002129 | 2.34E-13 | Chromosome partition protein MukF | |
| VP1048 | 2.21627 | 1.06E-15 | S-adenosylmethionine-dependent methyltransferase | |
| VP1049 | 1.637211 | 5.65E-10 | Positive regulator of competence TfoX | |
| 4 | VP0461 | 1.533797 | 5.29E-09 | UDP-N-acetylmuramate–L-alanine ligase |
| VP0462 | 1.756452 | 9.66E-11 | UDP-N-acetylglucosamine–N-acetylmuramyl | |
| VP0463 | 1.780125 | 2.75E-11 | Cell division protein FtsW | |
| VP0464 | 1.740744 | 8.28E-11 | UDP-N-acetylmuramoyl | |
| VP0465 | 1.743484 | 6.24E-11 | UDP-N-acetylmuramoylalanyl-D-glutamate–2 | |
| VP0466 | 1.889101 | 2.15E-12 | Cell division protein FtsI | |
| VP0467 | 2.073686 | 1.80E-14 | Penicillin-binding protein activator | |
| VP0468 | 1.984658 | 8.80E-13 | Predicted endonuclease | |
| 5 | VP0091 | 3.804372 | 1.85E-36 | UPF0118 membrane protein SMc00793 |
| VP0092 | 3.821178 | 2.33E-32 | FIG01201038: hypothetical protein | |
| VP0093 | 3.492542 | 8.14E-30 | putative membrane protein | |
| VP0094 | 3.575819 | 8.18E-22 | FIG01201571: hypothetical protein | |
| VP0095 | 4.757663 | 2.03E-50 | DUF2383 domain-containing protein | |
| VP0096 | 2.97958 | 2.04E-23 | FIG01200706: hypothetical protein | |
| VP0097 | 3.848639 | 1.97E-38 | Methylglyoxal synthase | |
| VP0098 | 3.289054 | 3.31E-26 | Hemerythrin domain protein | |
| VP0099 | 4.747694 | 5.81E-34 | hypothetical protein | |
| VP0100 | 4.948999 | 8.06E-56 | FIG01201373: hypothetical protein | |
| VP0101 | 4.774471 | 3.22E-54 | inducible periplasmic protein | |
| VP0102 | 2.187439 | 4.88E-15 | sigma-54 interacting response regulator | |
| 6 | VPA0220 | 3.603139 | 3.24E-05 | Protein ytfJ precursor |
| VPA0221 | 3.013183 | 2.07E-22 | Carbonic anhydrase alpha class | |
| VPA0222 | 3.386627 | 1.93E-13 | Long-chain fatty acid transport protein | |
| VPA0223 | 4.883209 | 1.43E-48 | Transcriptional regulator | |
| VPA0224 | 2.249278 | 6.81E-05 | hypothetical protein | |
| VPA0225 | 2.317688 | 1.16E-11 | Hemolysin | |
| 7 | VP2662 | 1.671946 | 3.19E-10 | Phospholipid ABC transporter |
| VP2663 | 1.973801 | 2.06E-13 | Phospholipid ABC transporter MlaC | |
| VP2664 | 1.781821 | 4.77E-11 | Phospholipid ABC transporter MlaB | |
| 8 | VPA0918 | 1.893487 | 1.55E-12 | FIG01199656: hypothetical protein |
| VPA0919 | 1.953746 | 2.73E-13 | Copper-sensing two-component system response | |
| VPA0920 | 2.052521 | 2.29E-14 | Signal transduction histidine kinase | |
| 9 | Unknown | 1.629797 | 1.10E-08 | hypothetical protein |
| Unknown | 1.715916 | 2.12E-10 | Outer membrane protein | |
| Unknown | 1.505204 | 1.19E-08 | hypothetical protein | |
| Unknown | 1.50863 | 7.42E-09 | hypothetical protein | |
| Unknown | 1.942236 | 4.04E-13 | hypothetical protein |