Table 2.

Differential expression comparison details and Limma and GEOlimma DE gene counts for all samples and 10 subsets of 40 samples of each comparison

Datasets	Source	Sample size	Limma DEGs	GEOlimma DEGs	Limma DEGs of DE sample	GEOlimma DEGs of DE sample
Asthma vs nonasthma	Moffatt et al. 2007	268 vs 136	0	–	0	–
Nonleuk vs MDS	Mills et al. 2009	164 vs 69	2619	5823	98.5±161.4	404.3±600.9
Nonleuk vs AML	Mills et al. 2009	202 vs 69	8610	13379	2788.9±901.5	5879.3±1415.2
AML vs MDS	Mills et al. 2009	164 vs 202	10975	15337	2881.5±1068.7	6017±1666.7