Appendix 1—table 1. Effect of MAG degradation on genome-scale metabolic network (GSMN) reconstructions.
Numbers are averages. '±' precedes standard deviation values. 'original’: initial MAGs prior degradation, '2pc100’: 2% gene removal in all MAGs, '5pc80’: 5% gene removal in 80% of MAGs, '5pc100’: 5% gene removal in all MAGs, '10pc70’: 10% gene removal in 70% of MAGs.
| Original | 2pc100 | 5pc80 | 5pc100 | 10pc70 | |
|---|---|---|---|---|---|
| Genes in MAGs | 2100 (±501) | 2058 (±491) | 2016 (±484) | 1994 (±478) | 1954 (±480) |
| Reactions in GSMNs | 1155 (±199) | 1131 (±192) | 1116 (±192) | 1108 (±190) | 1094 (±192) |
| Metabolites in GSMNs | 1422 (±212) | 1402 (±207) | 1388 (±208) | 1381 (±206) | 1366 (±208) |
| Genes in GSMNs | 543 (±108) | 532 (±106) | 521 (±105) | 515 (±103) | 505 (±105) |
| % reactions with genes | 73.84% | 74.05% | 73.82% | 73.72% | 73.61% |
| Gene loss in MAGs | — | 1.98% | 4.01% | 5.03% | 6.94% |
| Reaction loss in GSMNs | — | 1.96% | 3.30% | 3.89% | 5.17% |
| Metabolite loss in GSMNs | — | 1.37% | 2.41% | 2.91% | 3.92% |
| Gene loss in GSMNs | — | 2.09% | 4.17% | 5.11% | 7.02% |