Table 2. Results of the genome-scale metabolic network (GSMN) reconstruction step and metabolic potential analysis for the three datasets presented in the article (Avg = Average, '±' precedes standard deviation).
| Gut dataset | Rumen dataset | Diabetes dataset | |
|---|---|---|---|
| Initial data | Draft reference genomes | MAGs | MAGs |
| Number of genomes | 1520 | 913 | 778 |
| GSMN reconstruction | |||
| All reactions | 3932 | 4418 | 5554 |
| All metabolites | 4001 | 4466 | 5386 |
| Avg reactions per GSMN | 1144 (±255) | 1155 (±199) | 1640 (±368) |
| Avg metabolites per GSMN | 1366 (±262) | 1422 (±212) | 1925 (±361) |
| Avg genes per mn | 596 (±150) | 543 (±107) | 1658 (±469) |
| % reactions associated to genes | 74.6 (±2.17) | 73.8 (±2.61) | 79.57 (±1.60) |
| Avg pathways per mn | 163 (±49) | 146 (±32) | 220 (±58) |
| Metabolic potential | |||
| Number of seeds | 93 | 26 | 175 |
| Avg scope per mn | 286 (±70) | 101 (±44) | 508 (±83) |
| Union of individual scopes | 828 | 368 | 1326 |