Table 1.
GEP signatures used in this study.
| Signature name | Number of genes | Description |
|---|---|---|
| IFN-γ/IMS | 28 | This work |
| IFN-γ (44) | 6 | Averaging the expression levels of the IFN-γ signature genes |
| Exp. Immu. (44) | 18 | Averaging the expression levels of the expanded immune genes |
| Roh Immu. (74) | 41 | Averaging the expression levels of immune genes |
| Messina (75) | 12 | Principal component 1 score from PCA of expression levels of 12 chemokine signature genes |
| IMPRES (76) | 28 | Sum of ratios of 15 checkpoint or immune gene pairs |
| Huang NRS (77) | 69 | Averaging the expression levels of neoadjuvant response signature (NRS) genes |
| T eff. (78) | 8 | Averaging the expression levels of T-effector IFN-γ signature genes |
| Davoli (79) | 7 | Averaging the expression levels of cytotoxic immune signature genes |
| Cytotoxic (80) | 2 | Averaging the expression levels of granzyme A (GZMA) and perforin (PRF1) |