Table 1.

Clinical information and molecular typing results of 20 Japanese Treponema pallidum subspecies pallidum strains.

Sample ID	Sample type	Year detected	Detection location	Patient gender	Patient sexual orientation	Genome coverage (%)	Lineage	Sub-lineage	arp type	tpr type	tp0548 type	Macrolide sensitivity
14B001UK	Swab	2014	Tokyo	NA	NA	93.7	Nichols	–	14	d	c	S
15A011MM	Swab	2015	Tokyo	Male	MSM	98.4	SS14	1B	14	e	f	S
15A019HM	Swab	2015	Tokyo	Male	HM	98.4	SS14	8	14	d	f	R
16A013MM	Swab	2016	Tokyo	Male	MSM	91.1	SS14	1B	14	d	f	R
17A003MM	Swab	2017	Tokyo	Male	MSM	98.3	Nichols	–	14	b	c	S
17A014MM	Swab	2017	Tokyo	Male	MSM	97.3	SS14	1B	14	d	f	S
17A017MM	Swab	2017	Tokyo	Male	MSM	98.3	SS14	1B	14	d	f	R
17A021MM	Swab	2017	Tokyo	Male	MSM	98.3	Nichols	–	12	a	c	R
17C005HM	Swab	2017	Tokyo	Male	HM	90.8	SS14	1B	14	d	f	R
17C009HM	Swab	2017	Tokyo	Male	HM	96.0	SS14	1B	14	d	f	R
17D002HM	Swab	2017	Osaka	Male	HM	98.3	SS14	1B	14	d	f	R
17D006HM	Swab	2017	Osaka	Male	HM	92.7	SS14	1B	14	d	f	R
17D009HM	Swab	2017	Osaka	Male	HM	96.0	SS14	1B	14	d	f	R
17E002HF	Swab	2017	Tokyo	Female	HF	95.2	SS14	1B	14	d	f	R
18C004HM	Swab	2018	Tokyo	Male	HM	94.5	SS14	1B	14	d	f	R
18D001HM	Swab	2018	Osaka	Male	HM	95.2	SS14	1B	14	d	f	R
18D002HM	Swab	2018	Osaka	Male	HM	96.6	SS14	1B	14	d	f	R
18E001HF	Swab	2018	Tokyo	Female	HF	97.8	SS14	1B	14	d	f	R
18E002HF	Swab	2018	Tokyo	Female	HF	98.3	SS14	1B	14	d	f	R
18E016HF	Swab	2018	Tokyo	Female	HF	98.2	SS14	1B	14	d	f	R

NA, data not available; MSM, men who have sex with men; HF, heterosexual female; HM, heterosexual male; S, sensitive; R, resistant.