Table 1.
Functional groups of significant (FDR < 0.05) GO terms for differentially expressed genes specific only to de-acclimation.
| Ontology | Description | Number of DEGs and Direction of Regulation Referred to Cold-Acclimated State; T—Tolerant, S—Susceptible |
|---|---|---|
| Biological Process | phosphorylation | 39 upregulated (12 T, 27 S) |
| Biological Process | cellular protein modification process | 44 upregulated (13 T, 31 S) |
| Biological Process | cell recognition | 6 upregulated (S) |
| Biological Process | localization/transport | 40 S (25 upregulated, 15 downregulated) |
| Biological Process | phosphate-containing compound metabolic process | 27 upregulated (S) |
| Biological Process | ion transmembrane transport | 8 downregulated (S) |
| Biological Process | ATP metabolic process | 9 downregulated (S) |
| Biological Process | ribonucleoside monophosphate metabolic process | 9 downregulated (S) |
| Biological Process | cellular nitrogen (including nucleobase-containing) compound metabolic process | 24 (23) downregulated (S) |
| Molecular Function | adenyl ribonucleotide binding | 50 upregulated (15 T, 35 S) |
| Molecular Function | ATP binding | 32 upregulated (S) |
| Molecular Function | transferase activity | 44 upregulated (S) |
| Molecular Function | catalytic activity | 91 upregulated (S) |