Table 5.

Information on SNPs associated with growth traits

Traitsa	SNPs	rsnameb	GGAc	Position	Alleles	MAF	βd	Var (%)e	P value	Candidate gene	Distance (kb)f
BW28	AX_76670473	rs14422146	4	4,486,368	C/T	0.15	16.35	3.56	2.23e−05	TM9SF2L	D 33.97
BW28	AX_172583411	rs732597861	16	2,342,047	G/T	0.34	− 11.15	2.92	1.02e−07	BG8	U 47.43
BW28	AX_172583423	rs794119717	16	2,399,483	T/G	0.39	9.75	2.37	8.07e−06	BG8	D 3.59
BW28	AX_172583407	NA	16	2,451,685	C/T	0.26	− 16.75	5.61	9.08e−08	ZNF692	Intron 8
BW28	AX_172583410	rs736020965	16	2,455,748	A/G	0.44	− 11.83	3.62	1.32e−06	TRIM7.2	Intron 6
BW28	AX_172583409	rs739811469	16	2,469,604	G/A	0.27	13.63	3.87	1.94e−05	BZFP1	D 2.03
BW28	AX_101003762	rs15788030	16	2,502,939	T/C	0.26	− 19.26	7.56	4.41e−10	TRIM39.2	Intron 2
BW28	AX_75851417	rs312648889	16	2,506,461	T/C	0.41	13.32	4.50	5.81e−06	TRIM27.2	Exon 1
BW28	AX_75851232	rs15788124	16	2,537,500	C/T	0.12	− 16.62	3.11	2.52e−05	RACK1	D 7.68
BW28	AX_75851146	rs316225723	16	2,548,043	T/C	0.16	− 21.62	6.50	1.21e−08	BG1	U 2.17
BW28	AX_75852151	rs16042753	16	2,630,726	G/A	0.20	20.24	6.83	1.52e−08	CYP21A1	D 0.03
BW28	AX_75851193	rs315640666	16	2,658,014	G/A	0.41	− 14.44	5.32	3.42e−07	CD1B	U 4.15
BW42	AX_172570918	rs314078158	1	5,6289,810	T/C	0.17	− 25.08	3.11	2.70e−06	ATP6V0A4	U 39.37
BW42	AX_76670473	rs14422146	4	4,486,368	C/T	0.15	25.83	2.95	8.29e−06	TM9SF2L	D 33.97
BW42	AX_172581004	rs731588889	10	13,578,799	C/T	0.11	− 29.08	2.95	7.14e−06	MRPS11	U 33.53
BW42	AX_172583411	rs732597861	16	2,342,047	G/T	0.34	− 16.40	2.10	1.98e−07	BG8	U 47.43
BW42	AX_172583424	rs741681687	16	2,419,674	A/C	0.40	21.15	3.75	1.16e−06	KIFC1	U 19.46
BW42	AX_172583407	NA	16	2,451,685	C/T	0.26	− 27.29	4.95	7.17e−09	ZNF692	Intron 8
BW42	AX_101003762	rs15788030	16	2,502,939	T/C	0.26	− 22.19	3.33	1.94e−06	TRIM39.2	Intron 2
BW42	AX_75851146	rs316225723	16	2,548,043	T/C	0.16	− 25.15	2.92	1.10e−05	BG1	U 2.17

^aBW28, body weight at 28 d of age; BW42, body weight at 42 d of age

^bNA: not available

^cGallus gallus chromosome

^dAllele substitution effect was the additive effect estimated by GEMMA

^eThe proportion of the genetic variance accounted by the SNP

^fU and D indicate that the SNP is upstream and downstream of a gene, respectively