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. Author manuscript; available in PMC: 2022 Feb 4.
Published in final edited form as: Mol Cell. 2020 Dec 17;81(3):614–628.e4. doi: 10.1016/j.molcel.2020.11.033

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
rabbit anti phosphor-eIF2a (Ser51) Cell Signaling Technology 9721S
rabbit anti-GCN4 Thomas Dever lab N/A
rabbit anti GCN1 Alan Hinnebusch lab N/A
mouse anti-ubiquitin HRP Santa Cruz sc8017
mouse anti-FLAG Sigma F1804
rabbit anti-uS4 (Rps9) Abcam ab117861
rabbit anti-eRF1 Rachel Green lab N/A
goat anti mouse IgG HRP Thermo Scientific 31430
goat anti rabbit IgG HRP Thermo Scientific 31460
Chemicals, Peptides, and Recombinant Proteins
Phusion High Fidelity DNA polymerase NEB Cat#: M0530
Ambion RNase I Thermo Scientific AM2294
iTaq Universal SYBR Green Supermix BIO-RAD cat#1725121
M-MuLV reverse transcriptase NEB cat#M0253L
Random hexamer Thermo Scientific SO142
SuperSignal West Femto Maximum Sensitivity Substrate Thermo Scientific Cat#: 34095
SuperSignal West Pico Chemiluminescent Substrate Thermo Scientific Cat#: 30480
N-Ethylmaleimide Millipore Sigma Cat#: E3876
Xbal NEB Cat#: R0145
BamHI NEB Cat#: R0136
XhoI NEB Cat#: R0146
T4 DNA Ligase NEB Cat#: M0202
DNA Polymerase I, Large (Klenow) Fragment NEB Cat#: M0210
DNase I Thermo Scientific Cat#: 89836
cycloheximide ultra pure VWR Cat#: 94271
4-nitroquinoline 1-oxide Millipore Sigma N8141-1G
Methyl methanesulfonate Millipore Sigma 129925-25G
Hydroxyurea Millipore Sigma H8627-5G
Phenylmethylsulfonyl fluoride GoldBio P-470-10
anisomycin Millipore Sigma A5862
tigecycline Fisher Scientific T3589-100mg
Deposited Data
Raw and analyzed data This paper GEO:GSE150790
Experimental Models: Organisms/Strains
BY4741 (matA) Dharmacon lab N/A
DOM34Δ Doma and Parker, 2006 N/A
SUI2 (iosgenic strain for sui2-S52A) This paper N/A
sui2-S52A This paper N/A
SUI2, HEL2Δ This paper N/A
sui2-S52A; HEL2 Δ This paper N/A
HEL2Δ Yan et al., 2019 N/A
GCN1Δ Dharmacon N/A
GCN2Δ This paper N/A
GCN4Δ Dharmacon lab N/A
Hel2Δ; GCN2Δ This paper N/A
Rps3-FLAG Simms et al., 2017 N/A
GCN20Δ Dharmacon lab N/A
SLH1Δ This paper N/A
Oligonucleotides
DNA oligos for cloning: See Table S2 N/A N/A
Recombinant DNA
pYES2-eRF1 This paper N/A
pYES2-eRF1(GAQ) This paper N/A
Software and Algorithms
Ensembl release 76 N/A GCA_000146045.2
STAR version 2.5.1a Dobin et al., 2013 2.5.1a
Subread:featureCount Liao et al., 2014 version 1.4.6-p5
Salmon N/A version 0.8.23
RSeQC Wang et al., 2012 version 2.6.2
Perseus Tyanova et al., 2016 1.6.12
Image Lab Bio-Rad 6.1
GraphPad Prism GraphPad 8.4.3