Antibodies |
rabbit anti phosphor-eIF2a (Ser51) |
Cell Signaling Technology |
9721S |
rabbit anti-GCN4 |
Thomas Dever lab |
N/A |
rabbit anti GCN1 |
Alan Hinnebusch lab |
N/A |
mouse anti-ubiquitin HRP |
Santa Cruz |
sc8017 |
mouse anti-FLAG |
Sigma |
F1804 |
rabbit anti-uS4 (Rps9) |
Abcam |
ab117861 |
rabbit anti-eRF1 |
Rachel Green lab |
N/A |
goat anti mouse IgG HRP |
Thermo Scientific |
31430 |
goat anti rabbit IgG HRP |
Thermo Scientific |
31460 |
Chemicals, Peptides, and Recombinant Proteins |
Phusion High Fidelity DNA polymerase |
NEB |
Cat#: M0530 |
Ambion RNase I |
Thermo Scientific |
AM2294 |
iTaq Universal SYBR Green Supermix |
BIO-RAD |
cat#1725121 |
M-MuLV reverse transcriptase |
NEB |
cat#M0253L |
Random hexamer |
Thermo Scientific |
SO142 |
SuperSignal West Femto Maximum Sensitivity Substrate |
Thermo Scientific |
Cat#: 34095 |
SuperSignal West Pico Chemiluminescent Substrate |
Thermo Scientific |
Cat#: 30480 |
N-Ethylmaleimide |
Millipore Sigma |
Cat#: E3876 |
Xbal |
NEB |
Cat#: R0145 |
BamHI |
NEB |
Cat#: R0136 |
XhoI |
NEB |
Cat#: R0146 |
T4 DNA Ligase |
NEB |
Cat#: M0202 |
DNA Polymerase I, Large (Klenow) Fragment |
NEB |
Cat#: M0210 |
DNase I |
Thermo Scientific |
Cat#: 89836 |
cycloheximide ultra pure |
VWR |
Cat#: 94271 |
4-nitroquinoline 1-oxide |
Millipore Sigma |
N8141-1G |
Methyl methanesulfonate |
Millipore Sigma |
129925-25G |
Hydroxyurea |
Millipore Sigma |
H8627-5G |
Phenylmethylsulfonyl fluoride |
GoldBio |
P-470-10 |
anisomycin |
Millipore Sigma |
A5862 |
tigecycline |
Fisher Scientific |
T3589-100mg |
Deposited Data |
Raw and analyzed data |
This paper |
GEO:GSE150790
|
Experimental Models: Organisms/Strains |
BY4741 (matA) |
Dharmacon lab |
N/A |
DOM34Δ |
Doma and Parker, 2006 |
N/A |
SUI2 (iosgenic strain for sui2-S52A) |
This paper |
N/A |
sui2-S52A |
This paper |
N/A |
SUI2, HEL2Δ |
This paper |
N/A |
sui2-S52A; HEL2 Δ |
This paper |
N/A |
HEL2Δ |
Yan et al., 2019 |
N/A |
GCN1Δ |
Dharmacon |
N/A |
GCN2Δ |
This paper |
N/A |
GCN4Δ |
Dharmacon lab |
N/A |
Hel2Δ; GCN2Δ |
This paper |
N/A |
Rps3-FLAG |
Simms et al., 2017 |
N/A |
GCN20Δ |
Dharmacon lab |
N/A |
SLH1Δ |
This paper |
N/A |
Oligonucleotides |
DNA oligos for cloning: See Table S2
|
N/A |
N/A |
Recombinant DNA |
pYES2-eRF1 |
This paper |
N/A |
pYES2-eRF1(GAQ) |
This paper |
N/A |
Software and Algorithms |
Ensembl release 76 |
N/A |
GCA_000146045.2 |
STAR version 2.5.1a |
Dobin et al., 2013 |
2.5.1a |
Subread:featureCount |
Liao et al., 2014 |
version 1.4.6-p5 |
Salmon |
N/A |
version 0.8.23 |
RSeQC |
Wang et al., 2012 |
version 2.6.2 |
Perseus |
Tyanova et al., 2016 |
1.6.12 |
Image Lab |
Bio-Rad |
6.1 |
GraphPad Prism |
GraphPad |
8.4.3 |