Table 4.
Gene | Protein/RNP function | Target Genes | Biological consequences | Type of cancer | Expression in cancer | Ref |
---|---|---|---|---|---|---|
U1 snRNP | telescripting - inhibits premature cleavage and polyadenylation | global transcription elongation | 3’ UTR shortening, truncated mRNA, increased migration and invasion | HeLa | loss or change-of-function |
59 reviewed in57 |
PAP | Poly(A) Polymerase | n/a (PAP activity in cell extracts) | PAP activity is higher in acute leukemia than in chronic leukemia | AML, ALL, CML | upregulation | reviewed in54 |
APA (process) | alternative polyadenylation | NF-kB, GATA2, IAP-family of genes | global RNA shortening or lengthening | BM AML | upregulation | 56 |
CPSF1 | cleavage and polyadenylation, recruits nuclear export | AML1-ETO | oncogenic mRNA stability | AML | upregulation | 55 |
HuR | AU-rich RNA binding protein, mRNA stability | elF4E, cEBPβ, p21, FOXO3, MEK1, MEK2, DUSP10, ZFP36L1, MYC | mRNA stability | AML, BC CML | upregulation | reviewed in60 |
TTP | mRNAs degradation via the exosome or via Xrn1 exonuclease | VEGF, cytokines, c-IAP-2 | proapoptotic function in cancers | BC CML, DLBCL, acute phase ATL | loss-of-function, tumor suppressor | reviewed in 60 |
Abbreviations used: Acute myeloid leukemia (AML); acute promyeloblastic leukemia (APL); acute megakaryoblastic leukemia (AMKL); acute lymphoblastic or lymphocytic (ALL); B-cell acute lymphoblastic leukemia (B-ALL); adult T-cell leukemia/lymphoma (ATL); diffuse large B-cell lymphomas (DLBCLs); chronic myeloid leukemia (CML), chronic phase (CP), accelerated phase (AP), blast crisis (BC); chronic lymphoblastic or lymphocytic leukemia (CLL); myelodysplastic syndromes (MDS); multiple myeloma (MM); hepatocellular carcinoma (HCC); leukemia stem cell (LSC); wild type (WT); patient-derived xenograft (PDX); bone marrow (BM); hematopoietic stem/progenitor cells (HSCs, HSPCs).