TABLE 2.

Summary likelihood assignment of parentage of 32 C. canephora trees from three families based on 120 SNP markers.

Familya	Number, N	Female parent			Male parent
		Nf	Pair LOD	Probable parent	Nm	Pair LOD	Probable parentb	Trio LOD
B2 × E139	6	4	1.29–9.02	B2	0(3)	2.48–8.98	E138	13.11–45.68
H234 × H207	6	6	18.88-35.46	H234	4(2)	−3.00-2.95	H207	29.54–41.88
E139 × C134	20	3	13.49-22.61	E138	1(12)	Not applicable	12 clonesc	7.92–49.23

^aFamilies B2 × E139 and H234 × H207 were derived through controlled crossing, whereas family E139 × C134 was obtained from the open-pollinated biclonal seed garden.

N refers to the number of individuals sampled for each family; Nf refers to the number of individuals that had the correct female parent; Nm: outside and inside brackets refer to the number of individuals that had the correct male parent in agreement with breeders’ records and the number of individuals with the probable male parent assigned by CERVUS, respectively; Pair LOD and Trio LOD denotes progeny–parent pair LOD score for probable parent matches.

^bProbable parents in italics indicate pedigree that was in disagreement with breeders’ records of the parent used to generate the rest of the plants obtained from difference between the number of individuals sampled for each family (N) and number of individuals with the correct female (Nf) or male parent (Nm).

^cA number of clones from nearby trials to the biclonal seed garden from which the E139 × C134 family was derived.