Figure 2. Quality control of 10K genomes.
Default EnteroBase criteria are indicated by vertical dashed lines. Numbers of genomes in the 10K project which passed these cut-off criteria are indicated in blue and failures in yellow, with the total numbers of failures near the tops of the figures in yellow. The quality criteria consisted of N50 ≥20,000, genomic assembly size between 4 MB and 5.8 MB, a maximum of 600 contigs and a low fraction of uncalled, low quality bases (N’s).