Table 1. Sources of 9591 Salmonella isolates that were sequenced within the UoWUCC 10K genomes project.
| Themes and Sources | Number | Description |
|---|---|---|
| Rivers | Total: 466 | |
| A. Boehm (Stanford) | 19 | Central California rivers
( Walters et al., 2011; Walters et al., 2013) |
| R. Meinersmann
(USDA) |
188 | Upper Oconee river,
Georgia ( Meinersmann et al., 2008) |
| A. Uesbeck (Univ. of
Cologne) |
177 | Drinking water in wells
and ponds, Benin ( Uesbeck, 2009) |
| J. Wain (HPA, Colindale) | 82 | Thames River. England |
| Republic of Ireland | Total: 2125 | |
| A. Coffey (CIT) | 61 | Food |
| M. Murphy (Cork
County Vet lab) |
67 | Livestock, County Cork |
| D. Bolton (Teagasc,
AFRC) |
37 | Livestock, bovine |
| D. Prendergast (DAFM) | 479 | Domesticated animals
and food |
| M. Cormican (NSRL,
Galway) |
1126 | Human |
| N. Leonard (UCD,
Dublin) |
317 | Porcine |
| S. Fanning (UCD,
Dublin) |
38 | Environment |
| Northern Ireland | Total: 1755 | |
| J. Moore (Belfast City
Hospital) |
899 | Human |
| S. Strain (AFBI, Belfast) | 449 | Animal Health |
| B. Madden (AFBI,
Belfast) |
407 | Agri-Food |
| Taiwan | Total: 1131 | |
| Chao-Chin Chang
(SVM, NCHU) |
48 | Reptile isolates |
| Chien-Shun Chiou
(CDC) |
1083 | Human isolates |
|
Reptiles and human
isolates of the same serovar |
Total: 794 | |
| C. Kornschober
(Austria) |
366 | Austria |
| D. Gordon (Canberra) | 15 | Australian deserts
( Parsons et al., 2011) |
| X. Huijsdens (RIVM) | 296 | Netherlands |
| R. Helmuth (BfR Berlin) | 85 | Germany ( Achtman et al., 2012) |
| S. Pelkonen (EVIRA,
Finland) |
32 | Finland |
| General diversity | Total: 3320 | |
| Roy Curtiss 3rd | 33 | Human carrier strains,
Germany, 1980s |
| S. Porwollik (SKCC) | 25 | General diversity
( Porwollik et al., 2004) |
| E. De Pinna (HPA) | 90 | Enteritidis Phage type
references, UK ( Ward et al., 1987) |
| H.L. Andrews-
Polymenis |
52 | Typhimurium Phage type
references, Germany ( Andrews-Polymenis et al., 2004) |
| G. Wise (VLA,
Weybridge) |
436 | Animals, England |
| S. Quessy (McGill) | 18 | Mesenteric lymph nodes
from asymptomatic swine, Canada ( Perron et al., 2008) |
| F. Boyd | 61 | Original SARA/SARB
( Achtman et al., 2013) |
| L. Harrison (Univ of
Pittsburgh) |
314 | Humans, Global
( Krauland et al., 2009) |
| J. Wain (HPA, Colindale) | 103 | Humans, England
( Achtman et al., 2012) |
| F.-X. Weill (Institut
Pasteur) |
137 | Humans, France
( Achtman et al., 2012) |
| W. Rabsch (Robert
Koch-Institut, Wernigerode) |
232 | Humans, Germany
( Achtman et al., 2012) |
| Z. Jaradat (JUST,
Jordan) |
23 | Humans, Jordan |
| M. Zaidi (Mexico) | 64 | Humans, Mexico
( Wiesner et al., 2009) |
| R. Kingsley (Sanger) | 389 | Humans, Mali ( Tapia et al., 2015) |
| J. Bouldin (USDA) | 29 | Virulent Enteritidis |
| C. Kornschober
(Austria) |
86 | Boar & Swine,
Choleraesuis, Austria |
| U. Methner (Friedrich-
Loeffler-Institut) |
28 | Boar & Swine,
Choleraesuis, Germany ( Methner et al., 2010) |
| I. Rychlik (VRI, Czech
Republic) |
86 | Human, Typhimurium,
Czech Republic ( Matiasovicova et al., 2007) |
| E. Litrup & M. Torpdahl
(SSI, Denmark) |
1036 | Human, 1 strain
per MLVA type of Typhimurium , Denmark ( Lindstedt et al., 2007) |
| N. Williams (University
of Liverpool - IIGH) |
78 | Badger, Agama |
UowUCC: University of Warwick/University College Cork.