TABLE 5.
Prophage regions identified in S. suis genome sequences.
| Strain | Region # | Locusa | Lengthb | Classificationc | #CDSs | % GC content | Most similar phaged | Accession numbere |
| P1/7 | 1 | 1349343-1356912 | 7.5 | Incomplete | 9 | 41.3 | Strept 20617 (4) | NC_023403 |
| ISU2614 | 1 | 429,080-466,744 | 37.6 | Incomplete | 32 | 41.38 | Strept SMP (7) | NC_008721 |
| 2 | 829,615-844,154 | 14.5 | Incomplete | 27 | 38.07 | Strept 20617 (4) | NC_023403 | |
| 3 | 1,230,839-1,271,402 | 40.5 | Incomplete | 21 | 35.92 | Entero phiFL3A (1) | NC_013648 | |
| 4 | 1,441,542-1,467,871 | 26.3 | Questionable | 30 | 42.85 | Strept 315.3 (12) | NC_004586 | |
| 5 | 2,191,955-2,209,769 | 17.8 | Incomplete | 22 | 39.34 | Strept 315.2 (3) | NC_004585 | |
| ISU1606 | 1 | 562,081-580,311 | 18.2 | Questionable | 11 | 38.03 | Escher RCS47/Stx2c (2) | NC_042128 |
| 2 | 1,415,837-1,423,316 | 7.4 | Incomplete | 12 | 40.7 | Strept 20617 (4) | NC_023503 | |
| ISU2714 | 1 | 562,204-580,434 | 18.2 | Questionable | 11 | 38.03 | Escher RCS47/Stx2c (2) | NC_042128 |
| 2 | 1,417,636-1,425,115 | 7.4 | Incomplete | 10 | 40.71 | Strept 20617 (4) | NC_023403 | |
| ISU2660 | 1 | 408,070-445,755 | 37.6 | Incomplete | 32 | 41.39 | Strept SMP (7) | NC_008721 |
| 2 | 808,789-823,328 | 14.5 | Incomplete | 27 | 38.07 | Strept 20617 (4) | NC_023403 | |
| 3 | 1,428,335-1,454,664 | 26.3 | Questionable | 29 | 42.84 | Strept 315.3 (12) | NC_004586 | |
| 4 | 2,138,507-2,169,713 | 31.2 | Incomplete | 23 | 40.21 | Strept 315.2 (3) | NC_004585 | |
| ISU2514 | 1 | 1,435,050-1,476,790 | 41.7 | Questionable | 67 | 41.17 | Strept 315.3 (23) | NC_004586 |
| 2 | 2,120,246-217,2780 | 52.5 | Incomplete | 65 | 40.66 | Strept phiARI0462 (11) | NC_031942 | |
| 3 | 2,205,645-2,235,642 | 29.9 | Incomplete | 22 | 40.66 | Lacto bIL311 (5) | NC_002670 | |
| ISU2414 | 1 | 429,080-466,744 | 37.6 | Incomplete | 32 | 41.38 | Strept SMP (7) | NC_008721 |
| 2 | 829,615-844,154 | 14.5 | Incomplete | 27 | 38.07 | Strept 20617 (4) | NC_023403 | |
| 3 | 1,230,839-1,271,402 | 40.5 | Incomplete | 21 | 35.92 | Entero phiFL3A (1) | NC_013648 | |
| 4 | 1,441,542-1,467,871 | 26.3 | Questionable | 30 | 42.85 | Strept 315.3 (12) | NC_004586 | |
| 5 | 2,191,955-2,209,769 | 17.8 | Incomplete | 22 | 39.34 | Strept 315.2 (3) | NC_004585 | |
| ISU2812 | 1 | 2,301,378-2,354,519 | 53.1 | Questionable | 55 | 40.76 | Strept PH10 (27) | NC_012756 |
| ISU2912 | 1 | 164,415-207,484 | 43 | Incomplete | 66 | 41.35 | Strept phiARI0462 (12) | NC_031942 |
| 2 | 316,056-347,045 | 30.9 | Incomplete | 27 | 40.21 | Lacto bIL310 (3) | NC_002669 | |
| 3 | 432,867-441,801 | 8.9 | Incomplete | 9 | 37.76 | Bacill SP 15/Stx2c 1717 (2) | NC_031245 | |
| 4 | 490,566-540,145 | 49.5 | Intact | 80 | 41.67 | Strept SM1/Strept 315.3 (13) | NC_004996 | |
| 5 | 761,198-803,565 | 42.3 | Questionable | 69 | 41.23 | Strept SMP (16) | NC_008721 | |
| 6 | 1,522,677-1,580,400 | 57.7 | Intact | 70 | 40.80 | Lister 2389 (10) | NC_003291 | |
| 7 | 2,133,068-2,166,596 | 33.5 | Incomplete | 17 | 40.07 | Strept Abc2 (2) | NC_013645 | |
| 8 | 2,361,356-2,393,553 | 32.1 | Incomplete | 22 | 40.38 | Staphy SPbeta like/Salmon SJ46 (2) | NC_029119 | |
| 9 | 2,681,449-2,699,540 | 18 | Incomplete | 19 | 38.64 | Strept 315.2 (4) | NC_004585 | |
| SRD478 | 1 | 585,583-601,969 | 16.3 | Incomplete | 9 | 39.42 | Plankt PaV LD (1) | NC_016564 |
| 2 | 2,023,417-2,038,105 | 14.6 | Incomplete | 18 | 40.02 | Strept 315.2 (3) | NC_004585 |
aStart and end basepair chromosomal location. bLength of region depicted in kilobasepair (kb). cClassification determined by PHASTER analysis (http://phaster.ca/). dMost Common Phage Name (hit genes count). eMost common phage accession number.