Table 2.
Description | Gene markers | TIMER | GEPIA | ||
---|---|---|---|---|---|
r | P-value | r | P-value | ||
CD8+T Cell | CD8A | 0.552 | *** | 0.57 | *** |
CD8B | 0.342 | *** | 0.37 | *** | |
B Cell | CD19 | 0.285 | *** | 0.24 | *** |
CD79A | 0.373 | *** | 0.34 | *** | |
Monocyte | CD86 | 0.909 | *** | 0.92 | *** |
CD115(CSF1R) | 0.902 | *** | 0.9 | *** | |
TAMs | CCL2 | 0.522 | *** | 0.55 | *** |
CD68 | 0.661 | *** | 0.73 | *** | |
IL10 | 0.704 | *** | 0.75 | *** | |
M1 macrophage | INOS(NOS2) | 0.113 | * | 0.15 | ** |
IRF5 | 0.342 | *** | 0.4 | *** | |
COX2(PTGS2) | 0.074 | . | 0.17 | *** | |
M2 macrophage | CD163 | 0.903 | *** | 0.83 | *** |
VSIG4 | 0.865 | *** | 0.87 | *** | |
MS4A4A | 0.923 | *** | 0.93 | *** | |
Dendritic Cells | HLA-DPB1 | 0.661 | *** | 0.69 | *** |
HLA-DQB1 | 0.515 | *** | 0.4 | *** | |
HLA-DRA | 0.698 | *** | 0.71 | *** | |
HLA-DPA1 | 0.696 | *** | 0.7 | *** | |
BDCA-1(CD1C) | 0.46 | *** | 0.45 | *** | |
BDCA-4(NRP1) | 0.587 | *** | 0.64 | *** | |
CD11c (ITGAX) | 0.814 | *** | 0.8 | *** | |
NK Cells | KIR2DL1 | 0.366 | *** | 0.37 | *** |
KIR2DL3 | 0.326 | *** | 0.46 | *** | |
KIR2DL4 | 0.299 | *** | 0.3 | *** | |
KIR3DL1 | 0.286 | *** | 0.35 | *** | |
KIR3DL2 | 0.31 | *** | 0.37 | *** | |
KIR3DL3 | 0.077 | . | 0.048 | . | |
KID2DS4 | 0.253 | *** | – | – | |
T Cell (general) | CD3D | 0.566 | *** | 0.55 | *** |
CD3E | 0.53 | *** | 0.54 | *** | |
CD2 | 0.652 | *** | 0.67 | *** | |
Th1 | T-bet (TBX21) | 0.563 | *** | 0.58 | *** |
STAT4 | 0.624 | *** | 0.62 | *** | |
STAT1 | 0.343 | *** | 0.45 | *** | |
IFN-γ (IFNG) | 0.423 | *** | 0.45 | *** | |
TNF-α (TNF) | 0.279 | *** | 0.33 | *** | |
Th2 | GATA3 | 0.417 | *** | 0.44 | *** |
STAT6 | 0.019 | . | 0.016 | ** | |
STAT5A | 0.465 | *** | 0.55 | *** | |
IL13 | 0.133 | ** | 0.19 | *** | |
Tfh | BCL6 | 0.3 | *** | 0.4 | *** |
IL21 | 0.435 | *** | 0.49 | *** | |
Th17 | STAT3 | 0.365 | *** | 0.45 | *** |
IL17A | 0.007 | . | 0.031 | . | |
Treg cells | FOXP3 | 0.562 | *** | 0.59 | *** |
CCR8 | 0.665 | *** | 0.71 | *** | |
STAT5B | 0.346 | *** | 0.48 | *** | |
TGF-β | 0.453 | *** | 0.5 | *** | |
Neutrophils | CD66B | 0.064 | . | 0.069 | . |
CD11b | 0.784 | *** | 0.77 | *** | |
CCR7 | 0.492 | *** | 0.51 | *** | |
Exhaustion T cells | TIM-3 (HAVCR2) | 0.907 | *** | 0.92 | *** |
TIGIT | 0.57 | *** | 0.6 | *** | |
GZMA | 0.553 | *** | 0.56 | *** | |
LAG-3 | 0.501 | *** | 0.49 | *** | |
CTLA4 | 0.478 | *** | 0.54 | *** | |
PD-1 (PDCD1) | 0.467 | *** | 0.49 | *** |
TAMs – tumor-associated macrophages; NK cells – natural killer cells; Th1, Th2, Tfh, Th17 – helper T cell subtypes. P≥0.05,
P<0.05,
P<0.01,
P<0.001.