Table 1. Summary of assembly statistics.
| Genome | Method used and coverage | Total size (Mbp) | Number of contigs or scaffolds | GC (%) | N50 (bp) | L50 | Largest contig or scaffold length (bp) | # of gaps |
|---|---|---|---|---|---|---|---|---|
| Brazil A4 | ||||||||
| Draft | PacBio RSII (200x) | 44.97 | 677 | 51.56 | 227,072 | 48 | 1,236,815 | 0 |
| Scaffolded | Chicago (125x) and Hi-C (46,451x) | 45.00 | 402 | 51.56 | 907,746 | 18 | 2,710,165 | 295 |
| Final | PBJelly, Pilon and iCorn | 45.56 | 402 | 51.58 | 914,771 | 17 | 2,738,928 | 295 |
| Y C6 | ||||||||
| Draft | PacBio Sequel (130x) | 46.98 | 351 | 51.57 | 410,475 | 33 | 1,547,313 | 0 |
| Scaffolded | Chicago (2,096x) and Hi-C (21,551x) | 47.00 | 266 | 51.57 | 890,993 | 18 | 2,951,407 | 106 |
| Final | PBJelly, Pilon and iCorn | 47.22 | 266 | 51.58 | 889,019 | 18 | 2,951,016 | 106 |
* Draft assemblies are sequences with zero gaps.