Table I.
TNFSF |
|||||||||
---|---|---|---|---|---|---|---|---|---|
Teleost | Coelacanth | South American Lungfish | African Lungfish | Amphibian | Reptiles | Bird | Mouse | Human | |
TNFSF1 (LTA) | − | + | + | + | + | + | − | + | + |
TNFSF2 (TNF) | + | + | + | + | + | + | + | + | + |
TNFSF3 (LTB) | − | + | + | + | + | − | − | + | + |
TNFSF4 | − | − | − | − | − | + | + | + | + |
TNFSF5 (CD40LG) | + | + | + | + | + | + | + | + | + |
TNFSF6 (FASLG) | + | + | + | + | + | + | + | + | + |
TNFSF7 (CD70) | − | − | − | − | − | − | − | + | + |
TNFSF8 | − | + | − | + | − | + | + | + | + |
TNFSF9 | − | − | + | +a | − | + | − | + | + |
TNFSF10 | + | + | + | + | + | + | + | + | + |
TNFSF11 | + | + | − | + | + | + | + | + | + |
TNFSF12 | + | + | − | + | + | + | − | + | + |
TNFSF13 | + | + | + | + | + | + | − | + | + |
TNFSF13B | + | + | + | + | + | + | + | + | + |
TNFSF14 | + | + | + | + | + | + | + | + | + |
TNFSF15 | + | + | − | − | − | + | + | + | + |
TNFSF18 | + | − | − | − | − | + | + | + | + |
EDA-A1/EDA-A2 | + | + | − | + | + | + | + | + | + |
BALM | + | − | − | + | − | − | − | − | − |
Ita/TNFN | + | − | − | − | − | − | − | − | − |
Total number | 14 | 14 | 10 | 15 | 12 | 16 | 12 | 18 | 18 |
Presence and absence of TNF ligands in all vertebrate classes. Only hits with an E-value lower than 1 × 10−5 were considered. Note that “presence” does not imply orthology with mammalian counterparts.
Ligands that were not found through BLAST searches but were found using HMM searches. Only hits with an E-value lower than 1 × 10−5 were considered.