Table II.
TNFRSF |
|||||||||
---|---|---|---|---|---|---|---|---|---|
Teleost | Coelacanth | South American Lungfish | African Lungfish | Amphibian | Reptile | Bird | Mouse | Human | |
TNFRSF1A | + | + | + | + | + | + | + | + | + |
TNFRSF1B | + | + | + | +a | − | + | + | + | + |
TNFRSF3 (LTBR) | + | + | + | + | + | − | − | + | + |
TNFRSF4 | + | + | +a | − | + | + | + | + | + |
TNFRSF5 (CD40) | + | + | + | + | + | + | + | + | + |
TNFRSF6 (FAS) | + | + | + | + | + | + | + | + | + |
TNFRSF6B | + | + | − | − | + | + | + | + | + |
TNFRSF7 (CD27) | + | + | − | + | − | − | + | + | + |
TNFRSF8 | + | − | +a | +a | + | + | + | + | + |
TNFRSF9 | + | + | + | + | + | + | + | + | + |
TNFRSF10A | + | + | + | + | + | + | + | + | + |
TNFRSF10B | + | + | + | − | + | + | + | + | + |
TNFRSF10C | − | − | + | − | − | − | + | + | + |
TNFRSF10D | − | − | − | − | − | − | − | − | + |
TNFRSF11A | + | + | + | + | + | + | + | + | + |
TNFRSF11B | + | + | + | + | + | + | + | + | + |
TNFRSF12A | + | − | − | +a | + | + | + | + | + |
TNFRSF13B | + | + | + | + | − | + | + | + | + |
TNFRSF13C | − | − | +a | − | − | + | + | + | + |
TNFRSF14 | + | + | + | + | + | + | + | + | + |
TNFRSF16 (NGFR) | + | + | − | + | + | + | + | + | + |
TNFRSF17 | + | + | + | + | + | + | + | + | + |
TNFRSF18 | + | + | − | − | − | + | + | + | + |
TNFRSF19 | + | + | − | − | + | + | + | + | + |
TNFRSF19L (RELT) | + | + | − | − | + | − | + | + | + |
TNFRSF21 | + | + | + | + | + | + | + | + | + |
EDAR | + | + | − | +a | + | + | + | + | + |
TNFRSF25 | + | + | − | − | − | + | + | + | + |
TNFRSF27 (EDA2R) | − | + | − | − | + | + | + | + | + |
Total number | 25 | 24 | 18 | 18 | 21 | 24 | 27 | 28 | 29 |
Presence or absence of TNFRSF molecules in different vertebrate groups. BLAST and reverse-BLAST searches were performed using available transcriptomes and genomes from the main vertebrate groups. Only hits with an E-value lower than 1 × 10−5 were considered. Note that presence does not imply orthology with mammalian counterparts. TNFR superfamily members present in bony-jawed vertebrates.
Sequences only found through HMM and not found through blasting the created transcriptomes.