Table 2.
List of differentially expressed known miRNA of citrus leaves. TPM refers to transcripts per million, IS-S refers to Fe-sufficiency, ID-S refers to Fe-deficiency, FC refers to fold change which is the ratio of ID-S-TPM /IS-S-TPM
| miR-name | Length | Seq | IS-S-TPM | ID-S-TPM | FC | log2 (FC) | p value |
|---|---|---|---|---|---|---|---|
| csi-miR172a-5p | 21 | GCAGCGTCCTCAAGATTCACA | 37.77 | 16.65 | 0.44 | − 1.18 | 1.20E-07 |
| csi-miR319 | 21 | TTTGGACTGAAGGGAGCTCCT | 862.27 | 1740.51 | 2.02 | 1.01 | 9.61E-221 |
| csi-miR395 | 21 | CTGAAGTGTTTGGGGGAACTC | 37.77 | 0.58 | 0.02 | − 6.01 | 8.53E-36 |
| csi-miR397 | 21 | TCATTGAGTGCAGCGTTGATG | 70.01 | 8.18 | 0.12 | − 3.10 | 1.26E-42 |
| csi-miR398 | 21 | TGTGTTCTCAGGTCACCCCTT | 128.36 | 10.51 | 0.08 | − 3.61 | 4.41E-88 |
| csi-miR408 | 21 | ATGCACTGCCTCTTCCCTGGC | 3429.11 | 363.35 | 0.11 | − 3.24 | 0.00E + 00 |
| csi-miR477a | 21 | ACCTCCCTCGAAGGCTTCCAA | 7.37 | 15.77 | 2.14 | 1.10 | 1.40E-03 |
| csi-miR530a | 21 | TGCATTTGCACCTGCACCTTG | 1.23 | 3.80 | 3.09 | 1.63 | 4.00E-02 |
| MIR2089-x | 22 | TCTTACCTATGCCACCAATTCC | 9.52 | 0.58 | 0.06 | − 4.03 | 3.23E-08 |
| MIR319-y | 21 | ATCCAACGAAGCAGGAGCTGC | 339.32 | 761.46 | 2.24 | 1.17 | 3.67E-122 |
| MIR395-x | 21 | GTTCCTCCGAGCACTTCATTG | 1.84 | 0.01 | 0.01 | − 7.53 | 1.31E-02 |
| MIR395-y | 21 | TTGAAGTGTTTGGAGGAACTC | 54.05 | 18.99 | 0.35 | − 1.51 | 1.99E-14 |
| MIR398-x | 21 | GGGGCGACATGAGATCACATG | 41.46 | 5.84 | 0.14 | -2.83 | 1.11E-23 |
| MIR398-y | 21 | TGTGTTCTCAGGTCGCCCCTG | 17,198.65 | 2593.10 | 0.15 | − 2.73 | 0.00E + 00 |
| MIR408-x | 22 | ACGGGGAACAGGCAGAGCATGT | 5.22 | 0.01 | 0.00 | − 9.03 | 4.83E-06 |
| MIR408-y | 22 | TGCACTGCCTCTTCCCTGGCTT | 419.77 | 56.08 | 0.13 | − 2.90 | 9.19E-232 |
| MIR473-x | 22 | ACTCTCCCTCAAGGGCTTCGCT | 0.61 | 3.80 | 6.18 | 2.63 | 5.66E-03 |
| MIR479-x | 22 | TGTGATATTGTTTCGGCTCATC | 0.01 | 1.46 | 146.04 | 7.19 | 3.62E-02 |
| MIR5077-x | 21 | TTCTTCACGTCGGGTTCACCA | 54.97 | 22.78 | 0.41 | − 1.27 | 1.30E-11 |
| MIR5168-y | 21 | TCTCGGACCAGGCTTCAATTT | 4.30 | 0.58 | 0.14 | − 2.88 | 1.68E-03 |
| MIR535-y | 22 | CTGACAATGAGAGAGAGCACAC | 4.30 | 9.35 | 2.17 | 1.12 | 1.30E-02 |
| MIR6027-x | 22 | ATGGGTAGCACAAGGATTAATG | 0.01 | 2.34 | 233.67 | 7.87 | 4.88E-03 |
| MIR6027-y | 22 | TGAATCCTTCGGCTATCCATAA | 0.61 | 3.80 | 6.18 | 2.63 | 5.66E-03 |
| MIR6300-y | 18 | GTCGTTGTAGGATAGTGG | 4.61 | 45.27 | 9.83 | 3.30 | 3.05E-29 |
| MIR7122-x | 22 | TTATACAGAGAAATCACGGTCG | 5.22 | 1.17 | 0.22 | − 2.16 | 3.01E-03 |
| MIR7528-y | 22 | CCAAAATGCTAATCTGAGGCTT | 20.57 | 9.05 | 0.44 | − 1.18 | 9.47E-05 |