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. 2021 Jan 27;27(1):11–27. doi: 10.1007/s12298-021-00925-3

Table 2.

A list of miRNA families potentially targeting down-regulated genes in response to both (CMV and TuMV) viruses (where frequency > 5 and all miRNA families are related to CMV and TCV viruses)

Response to viruses MiRNA family Number of down-regulated target genes with the miRNA motif Mean UPE Mean expectation Inhibition mechanism
CMV and TuMV ath-miR5021 43 10.24 2.51 Cleavage/translation
ath-miR854 35 7.65 3 Cleavage/translation
ath-miR5658 23 9.34 2.15 Cleavage/translation
ath-miR172 19 16.77 2.31 Cleavage/translation
ath-miR414 17 11.79 2.55 Cleavage/translation
ath-miR157 9 16.99 3 Cleavage/translation
ath-miR395 9 19.81 2.16 Cleavage
ath-miR838 9 15.21 2.88 Cleavage/translation
ath-miR156 8 13.83 2.75 Cleavage/translation
ath-miR1886 7 9.52 2.78 Cleavage/translation
ath-miR159 6 12.94 2.75 Cleavage/translation
CMV and TCV ath-miR5021 4 9.42 2.25 Cleavage/translation
ath-miR393 2 10.68 2.5 Cleavage
ath-miR4239 1 19.93 2.5 Cleavage
ath-miR414 1 10.44 3 Cleavage
ath-miR838 1 9.92 3 Translation

UPE: maximum energy to unpair the target site

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