TABLE 4.
Detected resistance markers.
| Betalactamase gene (accession)1 | % identity | % coverage | Known mutations | n/n all (%) | Species | MLST (n isolates with marker present/n all isolates with ST) |
| – | – | – | GyrA: P104S | 92/147 (62.5%) | Microtus agrestis, Myodes glareolus, Microtus mystacinus, Rattus norvegicus, Myodes rutilus | 3,704 (1/1), 8,562 (1/1), 9,467 (4/4), 9,469 (3/3), 9,472 (6/6), 9,473 (50/50), 9,476 (4/4), 9,825 (8/8), 9,826 (1/1), 9,827 (1/1), 9,828 (1/1), 9,829 (2/2), 9,858 (2/2), 9,859 (5/5), 9,860 (1/1), and 9,861 (2/2) |
| blaOXA-184 (NG_049485.1) | 99.872 | 100 | – | 43/147 (29.3%) | Apodemus flavicollis | 9,468 (1/1), 9,471 (1/1), and 9,477 (41/41) |
| blaOXA-627 (NG_057498.1) | 99.87 | 100 | – | 6/147 (4%) | Micromys minutus | 9,474 (3/3) and 9,470 (3/3) |
| blaOXA-447 (NG_049732.1) | 100 | 100 | – | 1/147 (0.7%) | Apodemus flavicollis | 2,219 (1/1) |
| blaOXA-617 (NG_057550.1) | 99.61 | 100 | – | 3/147 (2%) | Myodes glareolus, Apodemus flavicollis | 1,304 (3/3) |
| blaOXA-448 (NG_049733.1) | 98.39 | 100 | – | 1/147 (0.7%) | Rattus norvegicus | 9,475 (1/1) |
1Closest hit from GeneBank using blast nucleotide. 2Truncated due to nucleotide deletion and frameshift.