Table 3.
The duplicate mode and estimation of absolute date for large-scale duplication events for PbrbHLHs
| Colinearity gene pairs | Duplication type | Method | Ka | Ks | Ka/Ks | MYA | P-Value (Fisher) | ||
|---|---|---|---|---|---|---|---|---|---|
| Gene1 | Gene2 | Gene1 | Gene2 | ||||||
| PbrbHLH6 | PbrbHLH14 | WGD | WGD | NG | 0.14 | 0.29 | 0.47 | 97.86 | 0.000549 |
| PbrbHLH10 | PbrbHLH135 | WGD | WGD | NG | 0.04 | 0.13 | 0.30 | 44.85 | 6.55E-08 |
| PbrbHLH20 | PbrbHLH103 | WGD | WGD | NG | 0.08 | 0.21 | 0.38 | 70.19 | 1.28E-06 |
| PbrbHLH21 | PbrbHLH22 | WGD | WGD | NG | NA | NA | NA | NA | NA |
| PbrbHLH24 | PbrbHLH28 | WGD | WGD | NG | 0.06 | 0.16 | 0.39 | 53.45 | 1.34E-08 |
| PbrbHLH25 | PbrbHLH145 | WGD | WGD | NG | NA | 0.01 | 0.00 | 2.39 | NA |
| PbrbHLH29 | PbrbHLH72 | WGD | WGD | NG | 0.59 | 2.37 | 0.25 | 790.30 | 9.99E-18 |
| PbrbHLH29 | PbrbHLH88 | WGD | WGD | NG | 0.06 | 0.22 | 0.28 | 73.35 | 5.03E-14 |
| PbrbHLH30 | PbrbHLH138 | WGD | WGD | NG | 0.07 | 0.16 | 0.46 | 53.44 | 0.0025151 |
| PbrbHLH38 | PbrbHLH112 | WGD | proximal | NG | 0.08 | 0.25 | 0.31 | 82.40 | 6.76E-11 |
| PbrbHLH40 | PbrbHLH15 | WGD | WGD | NG | 0.25 | 1.73 | 0.15 | 577.13 | 1.60E-33 |
| PbrbHLH40 | PbrbHLH111 | WGD | WGD | NG | 0.03 | 0.20 | 0.13 | 67.82 | 1.39E-13 |
| PbrbHLH42 | PbrbHLH48 | WGD | WGD | NG | 0.09 | 0.24 | 0.35 | 80.89 | 4.09E-06 |
| PbrbHLH44 | PbrbHLH46 | WGD | WGD | NG | 0.03 | 0.16 | 0.18 | 53.81 | 2.18E-15 |
| PbrbHLH49 | PbrbHLH114 | WGD | WGD | NG | 0.07 | 0.16 | 0.41 | 54.11 | 2.60E-08 |
| PbrbHLH53 | PbrbHLH186 | WGD | WGD | NG | 0.01 | 0.01 | 0.59 | 3.39 | 0.416491 |
| PbrbHLH61 | PbrbHLH47 | WGD | WGD | NG | 0.09 | 0.17 | 0.50 | 57.55 | 0.000638 |
| PbrbHLH61 | PbrbHLH142 | WGD | WGD | NG | 0.09 | 0.17 | 0.52 | 57.55 | 0.0010697 |
| PbrbHLH68 | PbrbHLH130 | WGD | WGD | NG | 0.03 | 0.11 | 0.30 | 37.23 | 3.36E-05 |
| PbrbHLH69 | PbrbHLH190 | WGD | WGD | NG | 0.07 | 0.15 | 0.47 | 49.46 | 3.18E-05 |
| PbrbHLH70 | PbrbHLH4 | WGD | WGD | NG | 0.06 | 0.20 | 0.30 | 66.52 | 2.02E-06 |
| PbrbHLH71 | PbrbHLH63 | WGD | WGD | NG | 0.01 | 0.04 | 0.38 | 13.25 | 0.0088433 |
| PbrbHLH72 | PbrbHLH94 | WGD | WGD | NG | 0.20 | 0.40 | 0.50 | 131.94 | 8.95E-06 |
| PbrbHLH73 | PbrbHLH76 | WGD | proximal | NG | NA | NA | NA | NA | NA |
| PbrbHLH74 | PbrbHLH75 | proximal | WGD | NG | NA | NA | NA | NA | NA |
| PbrbHLH74 | PbrbHLH179 | proximal | WGD | NG | 0.05 | 0.32 | 0.17 | 105.65 | 2.57E-15 |
| PbrbHLH75 | PbrbHLH179 | WGD | WGD | NG | 0.05 | 0.32 | 0.17 | 105.65 | 2.57E-15 |
| PbrbHLH81 | PbrbHLH47 | WGD | WGD | NG | 0.09 | 0.18 | 0.49 | 60.41 | 0.000206 |
| PbrbHLH81 | PbrbHLH61 | WGD | WGD | NG | 0.00 | 0.01 | 0.24 | 4.66 | 0.0623594 |
| PbrbHLH81 | PbrbHLH142 | WGD | WGD | NG | 0.09 | 0.18 | 0.50 | 60.41 | 0.0003516 |
| PbrbHLH83 | PbrbHLH151 | WGD | WGD | NG | 0.33 | 2.81 | 0.12 | 938.19 | 4.15E-23 |
| PbrbHLH86 | PbrbHLH93 | WGD | WGD | NG | 0.05 | 0.11 | 0.50 | 35.10 | 0.007392 |
| PbrbHLH90 | PbrbHLH123 | WGD | WGD | NG | 0.03 | 0.13 | 0.21 | 43.84 | 7.79E-10 |
| PbrbHLH91 | PbrbHLH194 | WGD | WGD | NG | 0.19 | 0.37 | 0.51 | 123.02 | 0.0001704 |
| PbrbHLH97 | PbrbHLH98 | tandem | tandem | NG | NA | NA | NA | NA | NA |
| PbrbHLH100 | PbrbHLH5 | WGD | WGD | NG | 0.05 | 0.17 | 0.28 | 56.22 | 1.41E-08 |
| PbrbHLH104 | PbrbHLH45 | WGD | WGD | NG | 0.07 | 0.10 | 0.70 | 32.29 | 0.185088 |
| PbrbHLH104 | PbrbHLH122 | WGD | WGD | NG | 0.00 | NA | NA | NA | NA |
| PbrbHLH110 | PbrbHLH152 | WGD | WGD | NG | 0.01 | 0.01 | 1.78 | 2.63 | 0.722276 |
| PbrbHLH115 | PbrbHLH24 | WGD | WGD | NG | NA | 0.00 | 0.00 | 1.38 | NA |
| PbrbHLH115 | PbrbHLH28 | WGD | WGD | NG | 0.06 | 0.16 | 0.39 | 53.45 | 1.34E-08 |
| PbrbHLH121 | PbrbHLH46 | WGD | WGD | NG | 0.03 | 0.16 | 0.18 | 53.81 | 2.18E-15 |
| PbrbHLH122 | PbrbHLH45 | WGD | WGD | NG | 0.07 | 0.10 | 0.69 | 32.39 | 0.140337 |
| PbrbHLH129 | PbrbHLH58 | WGD | WGD | NG | 0.03 | 0.22 | 0.11 | 74.60 | 6.27E-17 |
| PbrbHLH132 | PbrbHLH82 | WGD | WGD | NG | 0.10 | 0.23 | 0.43 | 75.83 | 0.0033683 |
| PbrbHLH133 | PbrbHLH37 | WGD | WGD | NG | 0.07 | 0.17 | 0.39 | 57.16 | 2.79E-06 |
| PbrbHLH134 | PbrbHLH59 | WGD | WGD | NG | 0.08 | 0.19 | 0.45 | 61.87 | 0.0024985 |
| PbrbHLH134 | PbrbHLH170 | WGD | WGD | NG | 0.44 | 1.98 | 0.22 | 661.66 | 2.55E-15 |
| PbrbHLH136 | PbrbHLH29 | WGD | WGD | NG | 0.36 | 1.49 | 0.24 | 497.24 | 6.84E-23 |
| PbrbHLH136 | PbrbHLH72 | WGD | WGD | NG | 0.52 | 1.81 | 0.29 | 603.96 | 1.79E-15 |
| PbrbHLH142 | PbrbHLH47 | WGD | WGD | NG | 0.00 | 0.01 | 0.16 | 4.40 | 0.0337635 |
| PbrbHLH143 | PbrbHLH131 | WGD | WGD | NG | 0.07 | 0.14 | 0.49 | 47.75 | 0.0087228 |
| PbrbHLH146 | PbrbHLH31 | WGD | WGD | NG | 0.04 | 0.22 | 0.18 | 73.41 | 5.22E-17 |
| PbrbHLH151 | PbrbHLH109 | WGD | WGD | NG | 0.05 | 0.15 | 0.32 | 48.85 | 0.0001836 |
| PbrbHLH151 | PbrbHLH174 | WGD | WGD | NG | 0.00 | 0.02 | 0.07 | 8.22 | 0.0100508 |
| PbrbHLH153 | PbrbHLH54 | WGD | WGD | NG | 0.16 | 0.21 | 0.73 | 71.01 | 0.0116334 |
| PbrbHLH155 | PbrbHLH150 | WGD | WGD | NG | 0.24 | 0.75 | 0.32 | 249.03 | 9.36E-21 |
| PbrbHLH157 | PbrbHLH149 | WGD | WGD | NG | 0.06 | 0.17 | 0.37 | 55.19 | 5.61E-10 |
| PbrbHLH170 | PbrbHLH89 | WGD | WGD | NG | 0.06 | 0.20 | 0.30 | 66.11 | 4.02E-06 |
| PbrbHLH171 | PbrbHLH53 | WGD | WGD | NG | 0.32 | 1.62 | 0.20 | 541.67 | 9.61E-24 |
| PbrbHLH174 | PbrbHLH109 | WGD | WGD | NG | 0.04 | 0.13 | 0.34 | 43.89 | 0.0005669 |
| PbrbHLH177 | PbrbHLH26 | WGD | WGD | NG | 0.34 | 2.62 | 0.13 | 874.92 | 4.32E-31 |
| PbrbHLH178 | PbrbHLH147 | WGD | WGD | NG | 0.01 | 0.00 | 1.40 | 1.42 | 0.772501 |
| PbrbHLH196 | PbrbHLH168 | WGD | WGD | NG | 0.06 | 0.10 | 0.59 | 31.88 | 0.0536712 |
| PbrbHLH197 | PbrbHLH169 | WGD | WGD | NG | 0.01 | 0.02 | 0.37 | 7.33 | 0.0941955 |