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. Author manuscript; available in PMC: 2021 Sep 4.
Published in final edited form as: J Proteome Res. 2020 Aug 20;19(9):3595–3606. doi: 10.1021/acs.jproteome.0c00448

Figure 4. Different approaches to analyzing proteomic data without an annotated genome.

Figure 4.

A. Using nucleic acid sequencing to generate an annotated genome or transcriptome. These can be used to analyze shotgun proteomic data. B. Searching shotgun proteomic data without prior/relevant nucleic acid sequencing. The software listed is not exhaustive and there are many suitable alternatives.