Table 1.
Primers used in comparison of candidate reference genes in Spinach.
| Gene name1 | Gene ID2 | Sequence of primer (forward/reverse) | Size of PCR product (bp) | Amplification efficiency (%) | Correlation coefficient (R2) |
|---|---|---|---|---|---|
| 18S rRNA | Spo14194 | GATTCCGACGAACAACTGCG | 141 | 98.96 | 0.998 |
| AAGTAACATCCGCCGATCCC | |||||
| Actin | Spo23599 | TGTTCACGACATCAGCCGAA | 138 | 99.36 | 0.999 |
| CGTCGGGTAGCTCGTAGTTC | |||||
| ARF | Spo09845 | CCGATAAGCTTGGCCTCCAT | 125 | 92.53 | 0.997 |
| AGCCTTGCTAGCGATGTTGT | |||||
| COX | Spo27102 | AGGTTGCTCATGCTGTCTTGA | 168 | 94.85 | 0.991 |
| CAACGACACTGATCTGGCCT | |||||
| CYP | Spo15438 | TCCTTTCCATGGCCAATGCT | 132 | 93.11 | 0.999 |
| CCCTAACAACGTCCATGCCT | |||||
| EF1α | Spo03008 | ACCTCTCAGGCTGATTGTGC | 173 | 102.80 | 0.995 |
| GAGTACTTGGGAGTGGTGGC | |||||
| GAPDH | Spo24687 | GGCTGCCATCAAGGAGGAAT | 129 | 93.56 | 0.999 |
| GCAATTCCAGCCTTGGCATC | |||||
| H3 | Spo20638 | AAGAAGCCTCACCGTTACCG | 178 | 94.48 | 0.998 |
| CCTCCTGAAGGGCCAAAACA | |||||
| RPL2 | Spo08157 | TTCTCGTCCGTCTCCCTTCT | 198 | 101.18 | 0.997 |
| TACCCTCACCACCACCATGA | |||||
| TUBα | Spo15071 | TAATGCCGCTGTTGCTACCA | 137 | 94.90 | 0.998 |
| CTCTCTGCACCTTGGCAAGA |
1Full names of these 10 genes are 18S ribosomal RNA (18S rRNA), actin, ADP ribosylation factor (ARF), cytochrome c oxidase (COX), cyclophilin (CYP), elongation factor 1-alpha (EF1α), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), histone H3 (H3), 50S ribosomal protein L2 (RPL2), and tubulin alpha chain (TUBα). 2These sequences and IDs were obtained from SpinachBase (http://www.spinachbase.org).