Table 1. Group 4 capsule (G4C) coding gene cluster of different species in Dickeya.
SL. No | Dickeya Strains | G4C/O-antigen capsule cluster | NCBI Accession | ||
---|---|---|---|---|---|
Size (Kb) | No. Of ORF | GC content (%) | |||
G4C Group I | |||||
1 | D. dianthicola GBBC 2039 | 22.3 | 20 | 52.5 | AOOM01000000 |
2 | D. dianthicola NCPPB 453 | 28.9 | 25 | 48.4 | AOOB01000000 |
3 | D. dianthicola DE440 | 28.9 | 25 | 48.4 | PJJB00000000 |
4 | D. dianthicola IPO 980 | 28.9 | 25 | 48.4 | AOOS01000000 |
5 | D. dianthicola ME23 | 28.9 | 25 | 48.4 | CP031560 |
6 | D. dianthicola RNS04.9 | 28.9 | 25 | 48.4 | CP017638 |
7 | D. dianthicola SS70 | 28.9 | 25 | 48.4 | QESZ00000000 |
8 | D. dianthicola WV516 | 28.9 | 25 | 48.4 | PJJC00000000 |
9 | D. dianthicola NCPPB 3534 | 28.9 | 25 | 48.4 | AOOK01000000 |
10 | D. dadantii NCPPB 898 | 31.3 | 27 | 48.9 | AOOE01000000 |
11 | D. dadantii DSM 18020 | 31.3 | 27 | 48.9 | CP023467 |
12 | D. dadantii NCPPB 3537 | 31.3 | 28 | 48.9 | AOOL01000000 |
13 | D. chrysanthemi NCPPB 516 | 31 | 27 | 47.6 | AOOC00000000 |
14 | D. sp. NCPPB 3274 | 36.1 | 31 | 50.2 | AOOH01000000 |
15 | D. dadantii 3937 | 32.1 | 26 | 48.1 | CP002038 |
* | D. paradisiaca NCPPB 2511 | 6.8 | 5 | 51.9 | AONV01000000 |
G4C Group II | |||||
1 | D. sp. 2B12 | 34.7 | 30 | 53.1 | JSYG00000000 |
2 | D. sp. FVG1-MFV-O17 | 34.7 | 30 | 53.1 | RJLR00000000 |
3 | D. sp. FVG10-MFV-A16 | 34.8 | 30 | 53.1 | RJLS00000000 |
4 | D. zeae EC1 | 34.8 | 30 | 50.8 | CP006929 |
5 | D. zeae DZ2Q | 34.8 | 30 | 50.9 | APMV00000000 |
6 | D. zeae Ech586 | 34.8 | 30 | 51.4 | CP001836 |
7 | D. zeae MS1 | 34.9 | 30 | 51.2 | APWM00000000 |
8 | D. zeae NCPPB 3531 | 34.7 | 30 | 51.2 | AOOI01000000 |
9 | D. zeae ZJU1202 | 34.8 | 30 | 50.8 | AJVN00000000 |
10 | D. fangzhongdai B16 | 36.7 | 31 | 55.4 | JXBN00000000 |
11 | D. fangzhongdai S1 | 36.7 | 31 | 55.4 | JXBO00000000 |
12 | D. sp. MK7 | 36.7 | 31 | 55.4 | AOOO01000000 |
13 | D. sp. Secpp 1600 | 36.7 | 31 | 55.3 | CP023484 |
14 | D. fangzhongdai DSM 101947 | 37.8 | 32 | 55.2 | CP025003 |
15 | D. fangzhongdai M005 | 37.6 | 32 | 55.1 | JSXD00000000 |
16 | D. fangzhongdai ND14b | 37.6 | 32 | 55.1 | CP009460 |
17 | D. fangzhongdai PA1 | 37.8 | 32 | 55.2 | CP020872 |
18 | D. dadantii subsp. dieffenbachiae NCPPB 2976 | 37.4 | 32 | 55.3 | AOOG01000000 |
19 | D. zeae MK19 | 35.6 | 31 | 51.2 | AOOR01000000 |
20 | D. zeae MS2 | 35.6 | 31 | 51.2 | CP025799 |
21 | D. zeae NCPPB 2538 | 35.6 | 31 | 51.2 | AOOF01000000 |
22 | D. zeae NCPPB 3532 | 35.6 | 31 | 51.2 | AONW01000000 |
23 | D. solani IPO 2222 | 35.9 | 31 | 54.8 | CP015137 |
24 | D. solani D s0432-1 | 35.9 | 31 | 54.8 | CP017453 |
25 | D. solani F012 | 35.9 | 31 | 54.8 | PDVN00000000 |
26 | D. solani GBBC 2040 | 35.9 | 31 | 54.8 | AONX01000000 |
27 | D. solani IFB0223 | 35.9 | 31 | 54.8 | CP024710 |
28 | D. solani IFB 0099 | 35.9 | 31 | 54.8 | JXRS01000000 |
29 | D. solani IFB_0158 | 35.9 | 31 | 54.8 | PENA00000000 |
30 | D. solani IFB_0221 | 35.9 | 31 | 54.8 | PEMZ00000000 |
31 | D. solani MK10 | 35.9 | 31 | 54.8 | AOOP01000000 |
32 | D. solani MK16 | 35.9 | 31 | 54.8 | AOOQ01000000 |
33 | D. solani PPO 9019 | 35.9 | 31 | 54.8 | CP017454 |
34 | D. solani PPO 9134 | 35.9 | 31 | 54.8 | JWLT00000000 |
35 | D. solani RNS 07.7.3B | 35.9 | 31 | 54.8 | JWLR00000000 |
36 | D. solani RNS 08.23.3.1.A | 35.9 | 31 | 54.8 | CP016928 |
37 | D. chrysanthemi NCPPB 3533 | 33.5 | 28 | 53.1 | AOOJ00000000 |
38 | D. solani RNS 05.1.2A | 36.6 | 31 | 54.0 | JWMJ00000000 |