Skip to main content
. 2021 Feb 1;17(2):e1008309. doi: 10.1371/journal.pcbi.1008309

Fig 6. Selected docking solutions for structures from the testing set.

Fig 6

Best pose found by rDock (with dock desolvation potential, left) and AnnapuRNA (DL 2013, right), together with scatter plots of RMSD and normalized score. Scatter plots show a regression line with a 95% confidence, and the top scoring pose according to each method is indicated by a red arrow. (A) 3SUX (Crystal structure of THF riboswitch, bound with THF fragment), (B) 1FYP (Decoding region A-site in complex with Paromomycin) and (C) 1AJU (HIV-2 TAR-argininamide complex). RNA molecules are presented as a gray cartoon, ligands as sticks; reference structure—green, solution found by rDock—red, solution found by AnnapuRNA—cyan. Heteroatoms are colored: O—red, N—blue.