Table 2.
Published Fasciola hepatica mature miRNAs not featured in miRBase database.
| Most Recent Published Annotation | Other Published Annotation | Mature miRNA Sequence(s) | Study | Sample | ||||
|---|---|---|---|---|---|---|---|---|
| Xu | Fontenla | Fromm 2015 | Fromm 2017 | Ovchinnikov | ||||
| Fhe-Let-7-P1 | let-7 Fhe-Let-7 |
GGAGGTAGTTCGTTGTGTGG_ GGAGGTAGTTCGTTGTGTGGT |
+ | – | + | + | + | Ad, EV |
| Fhe-Mir-1-P1 | fhe-mir-1 | TGGAATGTTGTGAAGTATGTAC | – | – | + | + | + | Ad, EV |
| Fhe-miR-2-P4 | fhe-mir-2a-B | TATCACAGCCCTGCTTGGAACA: TATCACAGCCCTGCTTGGAACACA |
– | – | + | + | + | Ad, EV |
| Fhe-Mir-7-P2 | fhe-mir-7b | TGGAAGACTTGTGATTAAGTTGT_ TGGAAGACTTGTGATTAAGTTGTT |
– | – | + | + | + | Ad, EV |
| Fhe-Mir-10-P3 | fhe-mir-10* | CAAGCTCGGGTATACAGGAGCAG | – | – | + | + | + | Ad, EV |
| Fhe-Mir-12 | fhe-mir-12 | TGAGTATTTCATCAAGTAGTG_ TGAGTATTTCATCAAGTAGTGA |
– | – | + | + | + | Ad, EV |
| Fhe-Mir-71-P2 | fhe-mir-71b | TGAAAGACATGGGTAATGAGGT | – | – | + | + | + | Ad, EV |
| Fhe-Mir-184-P1 Fhe-Mir-184-P2 |
fhe-mir-184 | TGGACGGAGATTTGTTAAGAGC | – | – | + | + | + | Ad, EV |
| Fhe-Mir-1175 | fhe-mir-1175 | TGAGATTCAACTACTTCAGCTG | – | – | + | + | + | Ad, EV |
| Fhe-Mir-1992 | fhe-mir-1992 | TCAGCAGTTGCACCATTGACG | – | – | + | + | + | Ad, EV |
| Fhe-Mir-1989 | fhe-mir-1989 | TCAGCTGTGTTCATGTCTTCGA | – | – | + | + | + | Ad, EV |
| Fhe-Mir-2160-P1 | fhe-mir-novel-5 Fhe-Mir-2160 |
TGGCGCTTAGTTATATGTCATCG | – | – | + | + | + | Ad, EV |
| Fhe-Mir-NOV-2 | fhe-mir-novel-6 | AGTGGTGATGGTCGAGTGGTTTAG AGTGGTGATGGTCGAGTGGTTTAG_ |
– | – | + | + | + | Ad, EV |
| Fhe-Mir-NOV-3 | fhe-mir-novel-7 | TCAGCACCGGCCGAAACGACAC TCAGCACCGGCCGAAACGACA |
– | – | + | + | + | Ad, EV |
| Fhe-Mir-92-P2 | fhe-mir-92b Fhe-Mir-92-P2 |
GATTGCACTACTCATAGCCTTC AGGCTGTGTGTAGAGCAAGTTG |
– | – | + | + | + | Ad, EV |
| Fhe-Mir-210-P2 | fhe-novel-3 Fhe-Mir-219-P2 |
TAGTCACTGGGCTACGAACACG TGTGCGTAGTTTCAGTGATTAGC |
– | – | + | + | + | Ad, EV |
| Fhe-Mir-NOV-4 | fhe-mir-novel-8 | ACCCTCATTTAGATCGAAGGT | – | – | + | + | – | Ad, EV |
| Fhe-Mir-NOV-5 | fhe-mir-novel-10 | AGACACTCAGAGGACGATCAGT | – | – | + | + | – | Ad, EV |
| Fhe-Mir-36-P2 | TCACCGGGTGTTTTTCACCCTC GGGTGGATACAGTCGGTTATG |
– | – | – | + | + | Ad, EV | |
| Fhe-Mir-190-P2 | TGATATGTATGGTTTTCGGTTG | – | – | – | + | + | Ad, EV | |
| Fhe-Mir-277-P2 | AAAATGCATCATCTACCCGAGA | – | – | – | + | + | Ad, EV | |
| Fhe-Mir-210-P1 | TTGTGCGTCGTTTCAGTGACCGAA | – | – | – | + | + | Ad, EV | |
| fhe-let-7-5p | TGAGGTAGTAGGTTGTATAGT | – | + | – | – | – | NEJ | |
| miR-2e-5p | TACCAACTTAGACTGCGTTAT | – | + | – | – | – | NEJ | |
| miR-61-5p | TGTGAGTCTCTTTCTTGTCCATG | – | + | – | – | – | NEJ | |
| miR-190-3p | CCAGTGACCAAACATATTCTC | – | + | – | – | – | NEJ | |
| miR-10-3p | AAATTCGAGTCTACAAGGAAC | – | + | – | – | – | NEJ | |
| miR-205 | CGAGGACGTTCAATGGGTTCT | – | + | – | – | – | NEJ | |
| miR-562 | TCTAGTCCGACTTTGTGAGGA | – | + | – | – | – | NEJ | |
| miR-598 | CGCTGTACGATGATGATGATTT | – | + | – | – | – | NEJ | |
| miR-920 | AGGTGTAGAAGTGGTAACACT | – | + | – | – | – | NEJ | |
| miR-1985 | TAAAGTGACTGTTAGAATGGT | – | + | – | – | – | NEJ | |
| miR-2478 | TCGTATCCCACCTCTGACACCA | – | + | – | – | – | NEJ | |
| miR-3487 | TCCCCGTAATCGAACTGTTGT | – | + | – | – | – | NEJ | |
| fhe-miR-3064 | CTGGCTGTTGCGGTTAAACC | – | + | – | – | – | NEJ | |
| fhe-novel-5 | TAGAGTACCTGTAGATTTAG | – | + | – | – | – | NEJ | |
| fhe-mir-novel-1 | GTGGCCTCGTAGCTCAGCTGGTAG | – | – | + | – | – | Ad, EV | |
| fhe-mir-novel-2 | TTTGCATATCTAAGTCGGACA | – | – | + | – | – | Ad, EV | |
| fhe-mir-novel-9 | GTCAGCGAAGACGTCGGGAA | – | – | + | – | – | Ad, EV | |
| fhe-mir-novel-11 | TCCGAAAACGCGATGGAACCT | – | – | + | – | – | Ad, EV | |
| fhe-mir-novel-12 | ATGAGACGGTGAGTGATGAATT | – | – | + | – | – | Ad, EV | |
| fhe-mir-novel-13 | GACCGGTGGTGGTCGAGTGGGTT | – | – | + | – | – | Ad, EV | |
| Fhe-Mir-36-P2 | TCACCGGGTGTTTTTCACCCTC | – | – | – | + | – | Ad, EV | |
| Fhe-Let-7-P3 | GAGGTAGTGAGTTGTATGTCTG | – | – | – | – | + | Ad, EV | |
| Fhe-Mir-36-P2 | GGGTGGATACAGTCGGTTATG | – | – | – | – | + | Ad, EV | |
| Fhe-Mir-133 | TTGGTCCCTATCAACCAGCTAT | – | – | – | – | + | Ad, EV | |
| Fhe-Mir-278 | TCGGTGGGAGTATCATTCGTGC | – | – | – | – | + | Ad, EV | |
| Fhe-Mir-2160-P2 | AGGCGCTTTGATTGTCCACACTGA | – | – | – | – | + | Ad, EV | |
Ad; adult fluke, EV; Adult fluke extracellular vesicles NE; Newly excysted juveniles; featured in study (+); not featured in study (-). Annotation of published miRNA as most up to date of that sequence across studies. Other published annotation represents studies by Xu et al. 2012 (37) (pink), Fromm et al. 2015 (39) (blue), Fromm et al. 2017 (33) (orange), and Ovchinnikov et al. 2020 (39) (green). Sequences that are featured in a study with identical annotation but a non-identical sequence are characterised with a yellow box. Sequences sorted based on presence throughout the featured studies.