A) IFNγ ELISA analysis was performed on media from
organoid co-cultures treated with IgG control, anti-PD-L1, anti-PD-1,
anti-PD-1/PD-L1 (bispecific), anti-PD-1+anti-PD-L1, and IgG+IgG. Average
IFNγ amounts normalized to the IgG control are shown here across all
experiments with error bars representing standard error of the mean. p-values
were calculated for all comparisons using a paired t-test. Comparisons of key
antibodies to the IgG control are shown. *<0.05, **<0.005,
***<0.0005. p-values for the significance of other treatment comparisons
are shown in Figure S6.
B) A heatmap is shown for the normalized ELISA results of each
individual tumor for IgG, anti-PD-L1, anti-PD-1, and the bispecific antibody.
The color code is shown on the left. In addition, bulk RNA sequencing was
performed on the parent tumors used to generate the co-cultures, and an
IFNG signature score was generated. Each tumor was
sequenced twice, and the average IFNG score from each parent
tumor is shown to the right of the heatmap as a horizontal bar graph with the
number score key below. Error bars represent standard deviation. C)
Flow cytometry analysis for IFNγ/Ki67 double positive CD4, CD8, and CD56
positive NK cells across treatments normalized to the IgG control.
D) Flow cytometry analysis for CD107A expression on CD4, CD8,
and CD56 positive NK cells across treatments normalized to the IgG control.
*p<0.05, **p<0.005, NS=Not significant. Error bars represent
standard error of the mean.