(
A) Analysis of SATB2 expression across tumor types in TCGA PanCancer dataset using cBio portal (
Gao et al., 2013). Melanoma (highlighted in red) SATB2 mRNA levels are comparable to other solid tumors where SATB2 has been established to play a role (i.e. RCC, Sarcoma, CRC). (
B) Western blot of SATB2 and SATB1 with a panel of antibodies showing protein expression in a panel of human melanoma cell lines and zebrafish MCR:EGFP, MCR:SATB2, and MCR:SATB1 control tumors. Actin loading control is shown. (
C) Frequency of SATB2 amplification in red across multiple available melanoma genomic studies (
ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium, 2020;
Hugo et al., 2015;
Snyder et al., 2014;
Van Allen et al., 2014). (
D) Correlation between SATB2 expression and melanoma metastasis-related overall survival in two independent publicly available dataset (
GSE8401 and
GSE22153) of melanoma followed for metastatic progression risk. Continuous expression Z-score optimized plots (mRNA expression Z-score value separating high vs. low expression that results in maximal statistical separation of the two curves) from the default output of the TIDE Harvard Portal gene query
http://tide.dfci.harvard.edu/ (
Fu et al., 2020).