Table 2.
Model | AUC (95% CI) | Accuracy % | Sensitivity | Specificity | R2 |
---|---|---|---|---|---|
Clinical predictors | .659 (.629, .689) | .615 | .623 | .607 | .057 |
Clinical predictors + a priori SNPs | .662 (.632, .692) | .628 | .642 | .613 | .059 |
Clinical predictors + elastic net SNPs | .655 (.625, .685) | .609 | .623 | .594 | .049 |
Clinical predictors model includes sociodemographic and pre-treatment symptom variables only. The model in the second row adds SNPs selected a priori based on work by10 to the clinical predictors model. The model in the third row adds the SNPs identified by the elastic net feature selection to the clinical predictors model. For threshold-dependent metrics (accuracy, sensitivity, specificity), a probability threshold of 0.5 was used for classification.