Table 1.
Potential and binding energies of structures Fig. 3a–f.
Ligand | Waters molecules exchangeda | Potential energy (Hartrees)b | Binding energy (kJ/mol)c | |
---|---|---|---|---|
a | Urea | 1 | − 3140.999223 | − 77.73342713 |
b | 2-MA | 1 | − 3140.994208 | − 64.56565459 |
c | Urea | 2 | − 3064.545142 | 22.46070774 |
d | 2-MA | 2 | − 3064.555789 | − 5.491864421 |
e | AHA | 3 | − 2988.140894 | − 8.180953242 |
f | 2-MA | 3 | − 2988.079474 | 153.0776375 |
aThe number of water molecules exchanged with the ligand upon binding to the wild type active site.
bPotential energies are quoted for the unrestricted Becke, 3-parameter, Lee–Yang–Parr (B3LYP)47–50 functional and 6-31G*/SDD basis sets51,52 (UB3LYP/6-31G*/SDD).
cBinding energies were calculated as potential energy of the structure plus the potential energies of any liberated water molecules (aqueous solvation with PCM, ε = 80), minus the potential energies of the wild type active site and aqueous solvated ligand (PCM, ε = 80). All calculated energies can be found in Supplementary Table 2.