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. 2021 Feb 3;35:106828. doi: 10.1016/j.dib.2021.106828
Subject Health and medical sciences
Specific subject area Vaccine surveillance studies, carriage survey
Type of data Questionnaires, CSV files and data dictionary
How data were acquired Data was collected by trained study personnel on a custom-built application for android phones. The questionnaires were designed in .xml format using Open Data Kit (ODK) software. Microbiological data was acquired by performing culture and sequential Multiplex PCR assay on the collected Nasopharyngeal swabs. Epidemiological data was then merged with the microbiological data using the common link ID (the study ID). Analysis and visualization were done using STATA version 15.0. and Microsoft Excel.
Data format The uploaded files on Mendeley consist of
  • 1.

    “Raw_dataset.csv” contains raw dataset in CSV format on epidemiological and microbiological fields on 3140 children under 2 years of age from a rural population in Pakistan. The data was collected between Oct 2014 to Sep 2018.

  • 2.

    “Codebook.xls” describing individual fields in the dataset along with the codebook.

  • 3.

    “DIB_questionaire.docx” is the field epidemiology questionnaire

  • 4.

    “Lab_questionnaire.docx” is the Lab questionnaire

Parameters for data collection Children under 2 years of age residing in two union councils (Khyber and Shah Alam Shah Jee Wasi) of Matiari, Sindh. Fifteen age-eligible children were enrolled every week from a continually updated line listing.
Description of data collection Data was collected during household visits by trained study personnel. Data on socio-demographic and clinical characteristics was collected using questionnaires on smart phones whereas nasopharyngeal specimens were collected using standardised methods for further microbiological analysis.
Data source location Institution: The Aga Khan University
City: Karachi
Country: Pakistan
Latitude and longitude for collected samples/data: Matiari, Sindh, Pakistan, 25.680298, 68.502711
Data accessibility The dataset can be accessed through the following link:
Nisar, Muhammad Imran (2021), “Impact of PCV10 on nasopharyngeal carriage in children in Pakistan”, Mendeley Data, V1,
doi:10.17632/t79h6g97gr.1
Related research article [1] Nisar MI, Ahmed S, Jehan F, Shahid S, Shakoor S, Kabir F, Hotwani A, Munir S, Muhammad S, Khalid F, Althouse B, Hu H, Whitney C, Ali A, Zaidi AKM, Omer SB, Iqbal N. Direct and indirect effect of 10 valent pneumococcal vaccine on nasopharyngeal carriage in children under 2 years of age in Matiari, Pakistan. Vaccine. 2021 Jan 6:S0264-410X(20)31662-5. doi:10.1016/j.vaccine.2020.12.066. Epub ahead of print. PMID: 33422379.