Table 2.
A summary of genome-wide RIP statistics of representatives of each RIP class and control genome assemblies investigated in this study.
| Species | Number of RIP-positive windows1 | RIP class | RIP-affected genomic proportion (%)2 | Large RIP affected regions (LRARs) | |||
|---|---|---|---|---|---|---|---|
| Number detected3 | Average size (bp) | Average GC (%) | Combined size (bp) | ||||
| Candida albicans | 0 | 1 | 0.0 | 0 | – | – | – |
| Escherichia coli | 0 | 1 | 0.0 | 0 | – | – | – |
| Encephalitozoon cuniculi | 1 | 1 | 0.0 | 0 | – | – | – |
| Ceratocystis albifundus | 28 | 1 | 0.1 | 0 | – | – | – |
| Fusarium graminearum | 206 | 2 | 0.3 | 2.0 | 6500.0 | 23.2 | 13,000 |
| Fusarium poae | 4,472 | 3 | 4.8 | 182 | 10821.4 | 14.9 | 1,969,500 |
| Trichoderma reesei | 4,551 | 4 | 6.5 | 179 | 10662.0 | 15.6 | 1,908,500 |
| Verticillium dahlia | 52 83 | 4 | 7.3 | 104 | 23966.4 | 25.1 | 2,492,500 |
| Leptosphaeria maculans | 10,225 | 5 | 11.8 | 275 | 7490.5 | 32.0 | 2,059,893 |
| Zymoseptoria tritici | 10,942 | 5 | 14.5 | 439 | 9670.0 | 15.2 | 4,245,131 |
| Neurospora crassa | 11,915 | 5 | 14.5 | 435 | 12347.1 | 28.4 | 5,371,000 |
| Pyrenophora teres | 32,740 | 6 | 29.5 | 406 | 38886.4 | 33.0 | 15,787,878 |
Organisms highlighted in bold served as control species. A full list of genome-wide RIP statistics is listed in Supplementary Table S5.
1
Based on RIP index values.
2
Proportion of the genome affected by RIP. Calculated using the total number of windows indicating RIP-positive index values against the total number of windows investigated for the entire genome sequence.
3
LRAR, large RIP affected genomic regions. More than 4,000 bp that are consecutively RIP affected.