TABLE 1.
Details of bacterial species and MOTs included in the murine oral microbiome databasea
| Taxonomy ID | Species ID | Type strain | 16S rRNA gene accession no. | Source host |
|---|---|---|---|---|
| MOT01 | Staphylococcus xylosus | ATCC 29971 | D83374 | Mus musculus /Apodemus sylvaticus |
| MOT02 | Staphylococcus saprophyticus | ATCC 15305 | NR_115607 | Mus musculus /Apodemus sylvaticus |
| MOT03 | Staphylococcus lentus | ATCC 29070 | D83370 | Mus musculus /Apodemus sylvaticus |
| MOT04 | Staphylococcus argenteus | MSHR1132 | FR821777 | Mus musculus |
| MOT05 | Staphylococcus sciuri | DSM 20345T | AJ421446 | Mus musculus /Apodemus sylvaticus |
| MOT06 | Staphylococcus epidermidis | ATCC 14990 | D83363 | Mus musculus |
| MOT07 | Staphylococcus warneri | ATCC 27836 | L37603 | Mus musculus |
| MOT08 | Staphylococcus nepalensis | DSM 15150 | AJ517414 | Mus musculus /Apodemus sylvaticus |
| MOT09 | Staphylococcus arlettae | ATCC 43957 | AB009933 | Mus musculus /Apodemus sylvaticus |
| MOT10 | Streptococcus danieliae | DSM 22233 | GQ456229 | Mus musculus |
| MOT11 | Streptococcus acidominimus | LMG 17755 | JX986969 | Mus musculus |
| MOT12 | Streptococcus species 1 | MN095260 | Mus musculus | |
| MOT13 | Streptococcus species 2 | MN095261 | Mus musculus | |
| MOT14 | Streptococcus species 3 | MN095262 | Apodemus sylvaticus | |
| MOT15 | Streptococcus species 4 | MN095263 | Mus musculus | |
| MOT16 | Lactobacillus taiwanensis | BCRC 17755 | EU487512 | Mus musculus |
| MOT17 | Lactobacillus animalis | NBRC 15882 | AB326350 | Mus musculus /Apodemus sylvaticus |
| MOT18 | Gemella palaticanis | CCUG 39489 | Y17280 | Mus musculus |
| MOT19 | Shigella flexneri | ATCC 29903 | X96963 | Mus musculus |
| MOT20 | Enterococcus faecalis | JCM 5803 | AB012212 | Mus musculus |
| MOT21 | Enterococcus gallinarum | ATCC 49573 | AF039900 | Mus musculus |
| MOT22 | Muribacter muris | NCTC 12432 | AY362894 | Mus musculus |
| MOT23 | Aerococcus viridans | NCTC 8251 | AB680262 | Mus musculus |
| MOT24 | Micrococcus aloeverae | DSM 27472 | KF524364 | Mus musculus |
| MOT25 | Pasteurella species 1 | MN095264 | Apodemus sylvaticus | |
| MOT26 | Acinetobacter johnsonii | ATCC 17909 | Z93440 | Mus musculus |
| MOT27 | Parabacteroides goldsteinii | WAL 12034 | AY974070 | Mus musculus |
| MOT28 | Dysgonomonas mossii | CCUG 43457 | AJ319867 | Mus musculus |
| MOT29 | Bacteroides acidifaciens | JCM 10556 | AB021164 | Mus musculus |
| MOT30 | Microbacterium paludicola | DSM 16915 | AJ853909 | Mus musculus |
| MOT31 | Neisseria species 1 | MN095265 | Apodemus sylvaticus | |
| MOT32 | Granulicatella species 1 | MN095266 | Apodemus sylvaticus | |
| MOT33 | Gemella species 1 | MN095267 | Apodemus sylvaticus | |
| MOT34 | Escherichia fergusonii | ATCC 35469 | AF530475 | Mus musculus |
| MOT35 | Enterococcus casseliflavus | ATCC 700327 | AF039903 | Mus musculus |
| MOT36 | Aerococcus urinaeequi | ATCC 29723 | D87677 | Mus musculus |
| MOT37 | Micrococcus yunnanensis | YIM 65004 | FJ214355 | Mus musculus |
| MOT38 | Jeotgalicoccus nanhaiensis | JSM 077023 | FJ237390 | Mus musculus |
| MOT39 | Citrobacter koseri | ATCC 27028 | HQ992945 | Mus musculus |
| MOT40 | Rothia nasimurium | CCUG 35957 | AJ131121 | Mus musculus |
| MOT41 | Proteus mirabilis | ATCC 29906 | DQ885256 | Mus musculus |
| MOT42 | Sanguibacter inulinus | NCFB 3024 | X79451 | Mus musculus |
| MOT43 | Gemella species 2 | MN095268 | Mus musculus | |
| MOT44 | Pasteurella species 2 | MN095269 | Apodemus sylvaticus | |
| MOT45 | Streptococcus species 5 | MN095270 | Apodemus sylvaticus | |
| MOT46 | Streptococcus cuniculi | CCUG 65085 | HG793791 | Apodemus sylvaticus |
| MOT47 | Dysgonomonas oryzarvi | JCM 16859 | AB547446 | Mus musculus |
| MOT48 | Escherichia coli | ATCC 11775 | X80725 | Mus musculus |
| MOT49 | Enterobacter cloacae | ATCC 13047 | AJ251469 | Mus musculus |
| MOT50 | Enterobacter species 1 | MN095271 | Mus musculus | |
| MOT51 | Lactobacillus johnsonii | ATCC 33200 | AJ002515 | Mus musculus |
| MOT52 | Lactobacillus gasseri | ATCC 33323 | AF519171 | Mus musculus |
| MOT53 | Micrococcus luteus | DSM 20030 | AJ536198 | Mus musculus |
| MOT54 | Micrococcus endophyticus | DSM 17945 | EU005372 | Mus musculus |
| MOT55 | Escherichia albertii | CCUG 46494 | AJ508775 | Mus musculus |
| MOT56 | Sanguibacter suarezii | ATCC 51766 | X79452 | Mus musculus |
| MOT57 | Sanguibacter keddieii | ATCC 51767 | X79450 | Mus musculus |
| MOT58 | Staphylococcus aureus | ATCC 12600 | L36472 | Mus musculus |
| MOT59 | Staphylococcus caprae | ATCC 35538 | AB009935 | Mus musculus |
| MOT60 | Staphylococcus haemolyticus | ATCC 29970 | X66100 | Mus musculus |
| MOT61 | Staphylococcus gallinarum | ATCC 35539 | D83366 | Mus musculus /Apodemus sylvaticus |
| MOT62 | Staphylococcus vitulinus | ATCC 51145 | AB009946 | Mus musculus /Apodemus sylvaticus |
| MOT63 | Streptococcus salivarius | ATCC 7073 | AY188352 | Mus musculus |
| MOT64 | Streptococcus vestibularis | NCTC 12167 | AY188353 | Mus musculus |
| MOT65 | Enterobacter hormaechei | ATCC 49162 | AJ508302 | Mus musculus |
| MOT66 | Enterobacter cancerogenus | ATCC 33241 | Z96078 | Mus musculus |
| MOT67 | Enterobacter asburiae | ATCC 35953 | AB004744 | Mus musculus |
| MOT68 | Enterobacter ludwigii | CCUG 51323 | AJ853891 | Mus musculus |
| MOT69 | Enterobacter mori | LMG 25706 | EU721605 | Mus musculus |
| MOT70 | Staphylococcus simiae | LMG 22723 | AY727530 | Mus musculus |
| MOT71 | Staphylococcus capitis | ATCC 27840 | L37599 | Mus musculus |
| MOT72 | Staphylococcus saccharolyticus | ATCC 14953 | L37602 | Mus musculus |
| MOT73 | Staphylococcus pasteuri | ATCC 51129 | AB009944 | Mus musculus |
| MOT74 | Staphylococcus hominis | ATCC 27844 | X66101 | Mus musculus |
| MOT75 | Staphylococcus petrasii | CCUG 62727 | JX139845 | Mus musculus |
| MOT76 | Staphylococcus devriesei | CCUG 58238 | FJ389206 | Mus musculus |
| MOT77 | Staphylococcus succinus | ATCC 700337 | AF004220 | Mus musculus /Apodemus sylvaticus |
| MOT78 | Staphylococcus cohnii | ATCC 29974 | D83361 | Mus musculus /Apodemus sylvaticus |
| MOT79 | Staphylococcus equorum | ATCC 43958 | AB009939 | Mus musculus /Apodemus sylvaticus |
| MOT80 | Staphylococcus fleuretti | ATCC BAA-274 | AB233330 | Mus musculus /Apodemus sylvaticus |
| MOT81 | Staphylococcus stepanovicii | CCM 7717 | GQ222244 | Mus musculus /Apodemus sylvaticus |
| MOT82 | Shigella dysenteriae | ATCC 13313 | X96966 | Mus musculus |
| MOT83 | Actinomyces bowdenii | DSM 15435 | AJ234039 | Wild Mus musculus |
| MOT84 | Providencia alcalifaciens | ATCC 9886T | AJ301684 | Wild Mus musculus |
| MOT85 | Providencia rustigianii | DSM 4541 | AM040489 | Wild Mus musculus |
| MOT86 | Turicella otitidis | DSM 8821 | X73976 | Mus musculus |
| MOT87 | Bacteroides thetaiotaomicron | NCTC 10582 | NR_074277 | Mus musculus |
| MOT88 | Klebsiella oxytoca | ATCC 13182 | AF129440 | Mus musculus |
| MOT89 | Klebsiella pneumoniae | ATCC 13883 | X87276 | Mus musculus |
| MOT90 | Klebsiella variicola | DSM 15968 | AJ783916 | Mus musculus |
| MOT91 | Corynebacterium stationis | DSM 20302 | FJ172667 | Mus musculus |
| MOT92 | Facklamia tabacinasalis | ATCC 700838 | Y17820 | Mus musculus |
| MOT93 | Lactobacillus murinus | ATCC 35020 | AJ621554 | Mus musculus |
| MOT94 | Ileibacterium valens | DSM 103668T | NR_156909 | Mus musculus |
| MOT95 | Rhodanobacter glycinis | NBRC 105007 | EU912469 | Mus musculus |
| MOT96 | Rodentibacter pneumotropicus | ATCC 35149 | M75083 | Mus musculus |
| MOT97 | Dubosiella newyorkensis | DSM 103457T | NR_156910 | Mus musculus |
| MOT98 | Helicobacter ganmani | CCUG 43526 | AF000221 | Mus musculus |
| MOT99 | Muribaculum intestinale | DSM 28989 | KR364784 | Mus musculus |
| MOT100 | Porphyromonas gingivalis | ATCC 33277 | AF414809 | Mus musculus |
| MOT101 | Devosia riboflavina | ATCC 9526 | AJ549086 | Mus musculus |
| MOT102 | Cutibacterium acnes | ATCC 6919 | X53218 | Mus musculus |
| MOT103 | Corynebacterium mastitidis | DSM 44356 | Y09806 | Wild Mus musculus |
a
Accession numbers are provided for 16S rRNA gene sequences of the type strains of named species.