TABLE 2.
Details of the draft microbial genomes sequenced as part of the development of the murine oral microbiome databasea
| Sample ID | Species ID | Taxonomy ID | Total length (bp) | GC% | Source | Accession no. |
|---|---|---|---|---|---|---|
| 19428wA1_WT6 | Staphylococcus xylosus | MOT01 | 2806698 | 32.68 | SPF C3H/Orl | JADGLO000000000 |
| 19428wB1_WM06 | Staphylococcus saprophyticus | MOT02 | 2920674 | 32.48 | Apodemus sylvaticus | JADGLJ000000000 |
| 3_3BalbC2O2_S3 | Staphylococcus lentus | MOT03 | 2925394 | 32.36 | SPF BALB/C | JADGLT000000000 |
| 19428wC1_HT5 | Staphylococcus lentus | MOT03 | 2910603 | 31.73 | SPF C3H/Orl | JADGLE000000000 |
| 19428wG1_AE2 | Staphylococcus lentus | MOT03 | 2856564 | 31.81 | SPF C57BL/6J | JADGMD000000000 |
| ACT.1 | Staphylococcus sciuri | MOT05 | 2737620 | 32.5 | SPF C3H/Orl | JADGMB000000000 |
| 19428wE1_BL01 | Staphylococcus sciuri | MOT05 | 2833136 | 32.42 | SPF C57BL/6J | JADGMG000000000 |
| 19428wF1_P912 | Staphylococcus warneri | MOT07 | 2628448 | 32.57 | SPF C3H/Orl | JADGMF000000000 |
| 19428wH1_IOV5 | Staphylococcus arlettae | MOT09 | 2600982 | 33.35 | SPF C3H/Orl | JADGMC000000000 |
| 1_1BalbC1O2_S1 | Streptococcus danieliae | MOT10 | 1356823 | 44.6 | SPF BALB/c | JADGLV000000000 |
| STR.1 | Streptococcus danieliae | MOT10 | 1969143 | 44.5 | SPF C3H/Orl | JADGKG000000000 |
| CCW311.1 | Streptococcus danieliae | MOT10 | 1616067 | 45.03 | SPF C57BL/6J | JADGKO000000000 |
| 5_7CXCR22O2_S5 | Streptococcus danieliae | MOT10 | 2927540 | 43.29 | SPF BALB/c | JADGLY000000000 |
| 19428wB2_HT4 | Streptococcus acidominimus | MOT11 | 2221121 | 42.77 | SPF C3H/Orl | JADGLI000000000 |
| 6_8CXCR23O2_S6 | Streptococcus acidominimus | MOT11 | 2509022 | 43.7 | SPF BALB/c | JADGLR000000000 |
| 19428wC2_LYSM12 | Streptococcus species 1 | MOT12 | 2417981 | 40.73 | SPF C3H/Orl | JADGLD000000000 |
| 19428wD3_AN2 | Streptococcus species 2 | MOT13 | 2324918 | 42.8 | SPF C3H/Orl | JADGKY000000000 |
| CIP106318T.1 | Gemella palaticanis | MOT18 | 1720464 | 27.55 | Culture collection, type strain | JADGKN000000000 |
| 19428wH2_1568 | Shigella flexneri | MOT19 | 5100000 | 50.71 | SPF C3H/Orl | JADGKR000000000 |
| 19428wA3_CC11 | Enterococcus faecalis | MOT20 | 6434324 | 39.02 | SPF C3H/Orl | JADGLM000000000 |
| 19428wB3_C2 | Enterococcus gallinarum | MOT21 | 3661725 | 40.12 | SPF C3H/Orl | JADGLH000000000 |
| ENT.1 | Enterococcus gallinarum | MOT21 | 3793521 | 40 | SPF C3H/Orl | JADGKL000000000 |
| 19428wC3_WT12 | Muribacter muris | MOT22 | 2520282 | 44.93 | SPF C3H/Orl | JADGLC000000000 |
| 7_18CXCR221ANO_S7 | Muribacter muris | MOT22 | 2535311 | 45.96 | SPF BALB/c | JADGLQ000000000 |
| 19428wE3_DK2 | Micrococcus aloeverae | MOT24 | 2559064 | 72.93 | SPF C57BL/6J | JADGLX000000000 |
| 19428wF3_WM03 | Pasteurella species 1 | MOT25 | 2264212 | 39.91 | Apodemus sylvaticus | JADGKV000000000 |
| 19428wG3_P14 | Parabacteroides goldsteinii | MOT27 | 6779962 | 43.44 | SPF C3H/Orl | JADGKT000000000 |
| 19428wE4_P11 | Dysgonomonas mossii | MOT28 | 4110280 | 37.31 | SPF C3H/Orl | JADGKW000000000 |
| 8_33DSS_C5_S8 | Bacteroides acidifaciens | MOT29 | 5228201 | 44.3 | SPF C3H/Orl | JADGLP000000000 |
| 19428wH3_P2318 | Bacteroides acidifaciens | MOT29 | 5116387 | 43.26 | SPF C3H/Orl | JADGKQ000000000 |
| 19428wA4_P1012 | Microbacterium paludicola | MOT30 | 2809652 | 70.53 | SPF C3H/Orl | JADGLL000000000 |
| 19428wB4_WF04 | Neisseria species 1 | MOT31 | 2568531 | 53.59 | Apodemus sylvaticus | JADGLG000000000 |
| 19428wC4_WM01 | Granulicatella species 1 | MOT32 | 2003757 | 33.14 | Apodemus sylvaticus | JADGLB000000000 |
| 19428wG4_IOV6 | Micrococcus yunnanensis | MOT37 | 2475752 | 73.07 | SPF C3H/Orl | JADGKS000000000 |
| 19428wE5_W307 | Jeotgalicoccus nanhaiensis | MOT38 | 2244448 | 41.43 | SPF C57BL/6J | JADGLW000000000 |
| 19428wH4_BL23 | Citrobacter koseri | MOT39 | 4821534 | 53.81 | SPF C57BL/6J | JADGKP000000000 |
| 19428wA5_irhom_31 | Rothia nasimurium | MOT40 | 2677034 | 59.02 | SPF C57BL/6J | JADGLK000000000 |
| 19428wB5_irhom_Sw | Proteus mirabilis | MOT41 | 3939005 | 38.79 | SPF C57BL/6J | JADGLF000000000 |
| DSM100099.1 | Sanguibacter inulinus | MOT42 | 4257809 | 70.83 | Culture Collection; Type Strain | JADGKM000000000 |
| 19428wG2_WT2a | Gemella species 2 | MOT43 | 1404407 | 30.33 | SPF C3H/Orl | JADGKU000000000 |
| GH3.1 | Gemella species 2 | MOT43 | 1563132 | 28.2 | SPF C3H/Orl | JADGKK000000000 |
| GL1.1 | Gemella species 2 | MOT43 | 1299399 | 30.25 | SPF C3H/Orl | JADGKJ000000000 |
| 19428wA2_WM07 | Streptococcus species 5 | MOT45 | 1714730 | 41.26 | Apodemus sylvaticus | JADGLN000000000 |
| 19428wD2_WM131 | Streptococcus cuniculi | MOT46 | 2407100 | 42.7 | Apodemus sylvaticus | JADGKZ000000000 |
| 19428wD4_HM13 | Escherichia coli | MOT48 | 5021976 | 50.62 | SPF C3H/Orl | JADGMH000000000 |
| 19428wE2_CC3 | Lactobacillus johnsonii | MOT51 | 1903680 | 34.48 | SPF C3H/Orl | JADGKX000000000 |
| 4_5BalbC4O2_S4 | Staphylococcus aureus | MOT58 | 2825768 | 33.69 | SPF BALB/c | JADGLS000000000 |
| 19428wD1_P36 | Staphylococcus aureus | MOT58 | 2692071 | 32.75 | SPF C3H/Orl | JADGLA000000000 |
| STF.1 | Staphylococcus aureus | MOT58 | 2699934 | 32.8 | SPF C3H/Orl | JADGKH000000000 |
| GW2.1 | Staphylococcus capitis | MOT71 | 2450948 | 32.8 | SPF C3H/Orl | JADGMA000000000 |
| WMus004.1 | Actinomyces bowdenii | MOT83 | 3174558 | 71.17 | Wild Mus musculus domesticus | JADGKF000000000 |
| WMus003.1 | Providencia alcalifaciens | MOT84 | 3909646 | 41.88 | Wild Mus musculus domesticus | JADGLZ000000000 |
| 2_2BalbC1BO2_S2 | Lactobacillus murinus | MOT93 | 2341418 | 40.54 | SPF BALB/c | JADGLU000000000 |
| 19428wF2_HT12 | Lactobacillus murinus | MOT93 | 2254694 | 39.68 | SPF C3H/Orl | JADGME000000000 |
| LAC.1 | Lactobacillus murinus | MOT93 | 2089346 | 40.1 | SPF C3H/Orl | JADGKI000000000 |
a
The 55 draft genomes are available to download from BioProject (PRJNA671681), while the individual accession numbers have been provided in the table itself.