TABLE1.
List of Primers Used for Amplification and Sequencing of HBV Genome
Primer Name | Primer Sequences | Location (nt)* |
---|---|---|
HBVP1†,‡ (Sense) | 5′-CCGGAAAGCTTGAGCTCTTCTTTTTCACCTCTGCCTAATCA -3′ | 1821-1841 |
HBVP2†,‡ (Antisense) | 5′-CCGGAAAGCTTGAGCTCTTCAAAAAGTTGCATGGTGCTGG -3′ | 1806-1825 |
F10§,║ (Sense) | 5′ -GACCACCAAATGCCCCTATC -3′ | 2297-2317 |
F3║ (Sense) | 5′-CGCCTCATTTTGTGGGTCAC-3′ | 2801-2820 |
F4║ (Sense) | 5′-CTCAGGCCATGCAGTGGAA- 3′ | 3164-3182 |
CF║ (Sense) | 5′-ACTGTTCAAGCCTCCAAGCT-3′ | 1861-1880 |
R4║,¶ (Antisense) | 5′-AGAGGACAAACGGGCAACA-3′ | 462-480 |
R2║ (Antisense) | 5′-AAATTACCACCCACCCAGG-3′ | 2109-2127 |
R3║ (Antisense) | 5′-AACTGGAGCCACCAGCAG- 3′ | 57-74 |
R5║ (Antisense) | 5′-AAAGCCCAAAAGACCCACAAT-3′ | 997-1017 |
F5║,¶ (Sense) | 5′-GATGTGTCTGCGGCGTTTTA- 3′ | 376-395 |
R9§,║ (Antisense) | 5′-TAGGAGTTCCGCAGTATGGA- 3′ | 1265-1284 |
R10║ (Antisense) | 5′-CAGCCTCCTAGTACAAAGAC-3′ | 1761-1780 |
F7║ (Sense) | 5′-TGTGCACTTCGCTTCACCTC-3′ | 1578-1597 |
nt positions are given according to HBV sequence with accession no. AF121242 obtained from GenBank.
Primers used for full-genome amplification of HBV isolates.
Günther et al.
Primers used for amplification of the complete surface region (2848–835 nt).
Primers used for sequencing of full-length as well as complete surface region.
Primers used for viral load determination by real-time PCR.