Table 2.
Cavity analysis for the predicted complex of RAI-S-37-bound SARS-CoV-2 RdRp. The total energy (kcal/mol) is the sum of van der Waals, electrostatic, polar solvation, and non-polar solvation. The residues are ranked by total energy. Only residues with binding energy greater than 0.5 kcal/mol are shown.
| Residue | van der Waals | Electrostatic | Polar solvation | Non-polar solvation | Total |
|---|---|---|---|---|---|
| G616 | −0.31 | −1.20 | 0.06 | −0.01 | −1.47 |
| D761 | −0.70 | −12.41 | 12.01 | −0.24 | −1.34 |
| K798 | −0.43 | −3.28 | 2.57 | −0.13 | −1.27 |
| W617 | −1.45 | −1.31 | 1.60 | −0.09 | −1.24 |
| W800 | −1.09 | −0.09 | 0.08 | −0.07 | −1.18 |
| D618 | −2.73 | 0.74 | 1.42 | −0.36 | −0.92 |
| S814 | −1.47 | 0.15 | 0.82 | −0.31 | −0.81 |
| E811 | −2.52 | −8.50 | 10.69 | −0.42 | −0.75 |
| S549 | −0.58 | −0.71 | 0.70 | −0.13 | −0.72 |
| C799 | −0.55 | 0.04 | −0.19 | −0.01 | −0.71 |
| A550 | −0.47 | −0.43 | 0.44 | −0.08 | −0.55 |