Table 6.
Linkage disequilibrium (LD) between single nucleotide polymorphisms (SNPs) of the IFITM1 and IFITM3 genes with r2 values in pandemic influenza A 2009 H1N1-affected individuals
| IFITM3 | IFITM1 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| c.-204G > T | c.-188 T > C | c.-181 T > C | c.-178A > C | c.-175 T > C | c.42C > T | c.669 T > C | c.-416C > G | c.-327A > C | c.186 + 18G > A | |
| IFITM3 | ||||||||||
| c.-204G > T | – | – | – | – | – | – | – | – | – | – |
| c.-188T > C | NA | – | – | – | – | – | – | – | – | – |
| c.-181T > C | 0.932 | NA | – | – | – | – | – | – | – | – |
| c.-178A > C | 0.932 | NA | 1.0 | – | – | – | – | – | – | – |
| c.-175T > C | 0.932 | NA | 0.863 | 0.863 | – | – | – | – | – | – |
| c.42C > T | NA | NA | NA | NA | NA | – | – | – | – | – |
| c.699T > C | NA | NA | NA | NA | NA | NA | – | – | – | – |
| IFITM1 | ||||||||||
| c.-416C > G | 0.536 | NA | 0.5 | 0.5 | 0.5 | NA | NA | – | – | – |
| c.-327A > C | NA | NA | NA | NA | NA | NA | NA | NA | – | – |
| c.186 + 18G > A | NA | NA | NA | NA | NA | NA | NA | NA | NA | – |
Bold texts indicate strong LD between IFITM1 SNP and IFITM3 SNPs (r2 > 0.3)