TABLE A3.
Primers used in this study
| Primers | Description | Uses | References |
|---|---|---|---|
| RT1 | 5′‐TTCTGCTTCCTGCACCAAAC‐3′ | RT‐PCR analysis | This study |
| RT2 | 5′‐CTTCCCGGATGCGGGCTCAT‐3′ | RT‐PCR analysis | This study |
| RT3 | 5′‐GATATCATGGGCCATAGC‐3′ | RT‐PCR analysis | This study |
| RT4 | 5′‐CAGCAGTTCGACATACTCTT‐3′ | RT‐PCR analysis | This study |
| RT5 | 5′‐TGAAATGACCACGTATGATT‐3′ | RT‐PCR analysis | This study |
| PCR1f | 5′‐ATCTTCATCTTGCCAGTGAG‐3′ | RT‐PCR analysis | This study |
| PCR1r | 5′‐TGTTTAATATCGTATTGCTG‐3′ | RT‐PCR analysis | This study |
| PCR2f | 5′–CATGGCGAAAATCCAGACCG‐3′ | RT‐PCR analysis | This study |
| PCR2r | 5′‐CAGGTTGCTGCTGCTGAAGA‐3′ | RT‐PCR analysis | This study |
| PCR3f | 5′‐GATCGGCTACGTATTCTGAG‐3′ | RT‐PCR analysis | This study |
| PCR3r | 5′‐CGTTGTTCAAGCAGTAAGAC‐3′ | RT‐PCR analysis | This study |
| PCR4f | 5′‐CATTCCTGGCGTCATCGGCT‐3′ | RT‐PCR analysis | This study |
| PCR4r | 5′‐AATAACATCGTCACAATGGC‐3′ | RT‐PCR analysis | This study |
| PCR5f | 5′‐TGCGCATCTCTGGCAGCGCC‐3′ | RT‐PCR analysis | This study |
| PCR5r | 5′‐TTCCGCTATATTCCACGCAA‐3′ | RT‐PCR analysis | This study |
| PCR6f | 5′‐ATCTTCATCTTGCCAGTGAG‐3′ | RT‐PCR analysis | This study |
| PCR6r | 5′‐AATAACATCGTCACAATGGC‐3′ | RT‐PCR analysis | This study |
| PCR7f | 5′‐TGCGCATCTCTGGCAGCGCC‐3′ | RT‐PCR analysis | This study |
| PCR7r | 5′‐CGTTGTTCAAGCAGTAAGAC‐3′ | RT‐PCR analysis | This study |
| PCR8f | 5′‐CATTCCTGGCGTCATCGGCT‐3′ | RT‐PCR analysis | This study |
| PCR8r | 5′‐CAGGTTGCTGCTGCTGAAGA‐3′ | RT‐PCR analysis | This study |
| HFQ1 | 5'‐GGCACTAGTACTGTTGCATCAACGCAT‐3’ | hfq deletion | This study |
| HFQ2 | 5'‐AAGCTTGGTACCGAATTCCATTCTATCTTTTCCTTATATGCT‐3’ | hfq deletion | This study |
| HFQ3 | 5'‐GAATTCGGTACCAAGCTTGCAGAGTAAGGCGGCACCGTTTAA−3’ | hfq deletion | This study |
| HFQ4 | 5'‐GGCGCATGCCAATTTACCTTCGTGGGT‐3’ | hfq deletion | This study |
| HFQP | 5'‐GGCCTCGAGCTGAAACAGGAAACAGCTATGGCTAAGGGGCAATCATTA‐3’ | hfq complementation | This study |
| HFQX | 5'‐GGCCTGCAGGCCTTACTCTGCGTTATCACC‐3’ | hfq complementation | This study |
| EanI_1 | 5'‐ACTAGTTCAAGTATTAGTAGTCTG‐3’ | eanI deletion | This study |
| EanI_2 | 5'‐AAGCTTGGTACCGAATTCACTGACGTCAAACAGTTCAAGCAT‐3’ | eanI deletion | This study |
| EanI_3 | 5'‐GAATTCGGTACCAAGCTTGATATTGTTGCACGTACGGGCTGC‐3’ | eanI deletion | This study |
| EanI_4 | 5'‐GCATGCACCATATGAACAACCTGG‐3’ | eanI deletion | This study |
| EanIX | 5'‐GGCCTCGAGCTGAAACAGGAAACAGCTATGCTTGAACTGTTTGACGTC‐3’ | eanI complementation | This study |
| EanIP | 5'‐GGCCTGCAGGTGTTGAGTTAGATCTTATCA‐3’ | eanI complementation | This study |
| EanI‐1E‐1 | 5'‐AAACCACACGTTCAGAAGAAC‐3’ | eanI lacZY insertion | This study |
| EanI‐2K | 5'‐GGTACCACACTAACTGCCCTTCGCAG‐3’ | eanI lacZY insertion | This study |
| RpoS_1 | 5'‐GGCACTAGTAGTACAACTAACAGTTCA‐3’ | rpoS deletion | This study |
| RpoS_2 | 5'‐AAGCTTGGTACCGAATTCCGTATTCTGGCTCATAAGTGGCTC‐3’ | rpoS deletion | This study |
| RpoS_3 | 5'‐GAATTCGGTACCAAGCTTGAATAAGCCGTCACAGAGCACATC‐3’ | rpoS deletion | This study |
| RpoS_4 | 5'‐GGCGCATGCTGTCTGAGAAACCTCACT‐3’ | rpoS deletion | This study |
| RpoS5 | 5'‐GGCCTCGAGCTGAAACAGGAAACAGCTATGAGCCAGAATACGCTGAAA‐3’ | rpoS complementation | This study |
| RpoS6 | 5'‐GGCGGATCCTTATTCGCGGAACAGTGCTTC‐3’ | rpoS complementation | This study |
| RpoSE | 5'‐GAGGAAGAAGTTCTCTTT‐3’ | rpoS lacZY insertion | This study |
| RpoSK | 5'‐GGTACCTTGTTCTGCAATTTCTTC‐3’ | rpoS lacZY insertion | This study |
| ArcZ_1 | 5'‐GGCACTAGTAGTGACCTTGCTAAGGGA‐3’ | arcZ deletion | This study |
| ArcZ_2 | 5'‐AAGCTTGGTACCGAATTCAACACCTTAGCAAATTCAAATTAC‐3’ | arcZ deletion | This study |
| ArcZ_3 | 5'‐GAATTCGGTACCAAGCTTGGCTGGGGTCATTTTTTTGTATCA‐3’ | arcZ deletion | This study |
| ArcZ_4 | 5'‐GGCGCATGCTATCAGTCTGAGAGCGAT‐3’ | arcZ deletion | This study |
| arcZH | 5'‐GGCAAGCTTATGAGATAAGATCCGGTG‐3’ | arcZ complementation | This study |
| arcZB | 5'‐ GGCGGATCCTTACAGCATCTTCAGCAG‐3’ | arcZ complementation | This study |
| CrtEE | 5'‐GACGGATTACTGGATTTGGCC‐3’ | crtE lacZY insertion | This study |
| CrtEK | 5'‐GGTACCCTGCATGGAGGCACAAAACAG‐3’ | crtE lacZY insertion | This study |
| EanR_1 | 5'‐ACTAGTTTTACCTGCCTGGATCGC‐3’ | eanR deletion | This study |
| EanR_2 | 5'‐AAGCTTGGTACCGAATTCCTATCAGACTGGGTGTTGAGTTAG‐3’ | eanR deletion | This study |
| EanR_3 | 5'‐GAATTCGGTACCAAGCTTTATGTAAGTCTGAAGCGTATCCGT‐3’ | eanR deletion | This study |
| EanR_4 | 5'‐GCATGCGCACAGGTGAAGGCTAAC‐3’ | eanR deletion | This study |
| EanRE | 5'‐TAGTTTGTGAAGTCTGGC‐3’ | eanR lacZY insertion | This study |
| EanRK | 5'‐GGTACCAATCAGAACATTTGAAGG‐3’ | eanR lacZY insertion | This study |
| JWK5 | 5'‐GGCCTCGAGCTGAAACAGGAAACAGCTATGTTTTCTTTTTTTCTTGAA‐3’ | eanR complementation | This study |
| JWK6 | 5'‐GGCCTGCAGTGGGGATATTGTTGCACGTAC‐3’ | eanR complementation | This study |
| clpE | 5'‐TTAAAGAACGCGTAATCT‐3’ | clpP lacZY insertion | This study |
| clpK | 5'‐GGTACCAATCATCACGCGTGAGTT‐3’ | clpP lacZY insertion | This study |
| clpP_1 | 5'‐GGCACTAGTTACAGCAAGAATAACGAG‐3’ | clpP deletion | This study |
| clpP_2 | 5'‐AAGCTTGGTACCGAATTCCATAATTTCGTTGGCAACATTCTG‐3’ | clpP deletion | This study |
| clpP_3 | 5'‐GAATTCGGTACCAAGCTTTAAGCCCTAACTTCGCCTTGTCTC‐3’ | clpP deletion | This study |
| clpP_4 | 5'‐GGCGCATGCACGTTTGTAGTGGTTGTA‐3’ | clpP deletion | This study |
| OR3 | 5'‐GGCGAATTCCTGAAACAGGAAACAGCTATGTCATACAGTGGCGATCGT‐3’ | clpP complementation | This study |
| OR4 | 5'‐GGCGGATCCTTATTGGCGATGCGTCAGGAT‐3’ | clpP complementation | This study |