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. Author manuscript; available in PMC: 2022 Jan 11.
Published in final edited form as: Cancer Cell. 2021 Jan 11;39(1):83–95.e4. doi: 10.1016/j.ccell.2020.12.011
Sample Intra-chr7 breakpoints Reason
TCGA-06-0211-01A 55110908-55222135 Exons 2-7 deletion leading to vIII isoform.
55163884-55232907 Exons 2-14 deletion with only 1 softclip read support.
TCGA-06-0211-02A 55163884-55232907 Exons 2-14 deletion leading to the aberrant splice junction.
Both samples 54663335-55223635 560 Kb deletion.