Table 1.
Didymellaceae isolates examined in this study. Novel taxa and newly generated sequences are indicated in bold.
| Species | Strain 1 | Host | Locality 2 | GenBank accessions 3 | |
|---|---|---|---|---|---|
| ITS | rpb2 | ||||
| Ascochyta astragalina | CBS 113797 | Lathyrus vernus | Sweden | KT389482 | MT018257 |
| Ascochyta benningiorum | CBS 144957 T | Soil | The Netherlands | MN823581 | MN824606 |
| Ascochyta coronillae-emeri | MFLUCC 13-0820 T | Hippocrepis emerus | Italy | MH069661 | MH069679 |
| Ascochyta fabae | CBS 524.77 | Phaseolus vulgaris | Belgium | GU237880 | MT018241 |
| Ascochyta herbicola | CBS 629.97 | Water | USA, Montana, Missoula | GU237898 | KP330421 |
| Ascochyta koolunga | DAR 78535 T | Pisum sativum | Australia, SA, Minnipa | EU338416 | EU874849 |
| BRIP 70265 | Pisum sativum | Australia, SA, Riverton | MN567671 | MN604922 | |
| BRIP 69590 | Pisum sativum | Australia, SA, Mundulla | MN567672 | MN604923 | |
| Ascochyta lentis | CBS 370.84 | Lens culinaris | Unknown | KT389474 | MT018246 |
| Ascochyta medicaginicola | CBS 112.53 T | Medicago sativa | USA | GU237749 | MT018251 |
| Ascochyta nigripycnidia | CBS 116.96 T | Vicia cracca | Russia | GU237756 | MT018253 |
| Ascochyta phacae | CBS 184.55 T | Phaca alpine | Switzerland | KT389475 | MT018255 |
| Ascochyta pilosella | CBS 583.97 T | Clintonia uniflora | Canada | MN973590 | MT018258 |
| Ascochyta pisi | CBS 122785 | Pisum sativum | The Netherlands | GU237763 | MT018244 |
| Ascochyta rabiei | CBS 237.37 T | Cicer arietinum | Bulgaria | KT389479 | MT018256 |
| Ascochyta rosae | MFLUCC 15-0063 T | Rubus ulmifolius | Italy | KY496751 | KY514409 |
| Ascochyta syringae | CBS 545.72 T | Syringa vulgaris | The Netherlands | KT389483 | MT018245 |
| Ascochyta versabilis | CBS 876.97 | Silene sp. | The Netherlands, Wageningen | GU237909 | KT389561 |
| Ascochyta viciae | CBS 451.68 | Vicia sepium | The Netherlands, Baarn, Praamgracht | KT389484 | KT389562 |
| Ascochyta viciae-pannonicae | CBS 254.92 | Vicia pannonica | Czechoslovakia | KT389485 | MT018250 |
| Ascochyta viciae-villosae | CBS 255.92 | Vicia villosa | Czechoslovakia | MN973584 | MT018249 |
| Didymella americana | CBS 185.85 | Zea mays | USA, Georgia | FJ426972 | KT389594 |
| Didymella anserina | CBS 253.80 | Germany | KT389498 | KT389595 | |
| Didymella arachidicola | CBS 333 .75 T | Arachis hypogaea | South Africa, Cape Province | GU237833 | KT389598 |
| Didymella aurea | CBS 269.93 T | Medicago polymorpha | New Zealand, Auckland | GU237818 | KT389599 |
| Didymella chlamydospora | YW23-14 T | Soil | South Korea | MK836111 | LC480708 |
| Didymella coffeae-arabicae | CBS 123380 T | Coffea Arabica | Ethiopia | FJ426993 | KT389603 |
| Didymella combreti | CBS 137982 T | Combretum mossambiciensis | Zambia | MN973525 | MT018139 |
| Didymella curtisii | CBS 251.92 | Nerine sp. | The Netherlands | FJ427038 | MT018131 |
| Didymella degraaffiae | CBS 144956 T | Soil | The Netherlands | MN823444 | MN824470 |
| Didymella eucalyptica | CBS 377.91 | Eucalyptus sp. | Australia, WA | GU237846 | KT389605 |
| Didymella gardeniae | CBS 626.68 T | Gardenia jasminoides | India | FJ427003 | KT389606 |
| Didymella glomerata | CBS 528.66 | Chrysanthemum sp. | The Netherlands | FJ427013 | GU371781 |
| Didymella guttulata | CBS 127976 T | Soil | Zimbabwe | MN973524 | MT018138 |
| Didymella heteroderae | CBS 109.92 T | Undefined food material | The Netherlands | FJ426983 | KT389601 |
| Didymella keratinophila | UTHSC DI16-200 T | Homo sapiens | USA | LT592901 | LT593039 |
| Didymella lethalis | CBS 103.25 | GU237729 | KT389607 | ||
| BRIP 69584 | Lathyrus tingitanus | Australia, SA, Brownhill Creek | MN567674 | MN604925 | |
| Didymella magnoliae | MFLUCC 18-1560 T | Magnolia grandiflora | China | MK347814 | MK434852 |
| Didymella maydis | CBS 588.96 T | Zea mays | USA, Wisconsin, Hancock | FJ427086 | GU371782 |
| Didymella mitis | CBS 443.72 T | Soil | South Africa | MN973523 | MT018137 |
| Didymella musae | CBS 463.69 | Mangifera indica | India | FJ427026 | MT018148 |
| Didymella nigricans | CBS 444.81 | Acer palmatum | Japan | KY742075 | KY742158 |
| Didymella pinodella | CBS 318.90 | Pisum sativum | The Netherlands | FJ427051 | MN983533 |
| BRIP 69589 | Pisum sativum | Australia, VIC, Rainbow | MN567675 | MN604926 | |
| Didymella pinodes | CBS 525.77 T | Pisum sativum | Belgium | GU237883 | KT389614 |
| BRIP 69581 | Senna artemisioides | Australia, SA, Blanchetown | MN567676 | MN604927 | |
| BRIP 69593 | Senna artemisioides | Australia, SA, Blyth | MN567677 | MN604928 | |
| BRIP 69596 | Senna artemisioides | Australia, SA, Wudinna | MN567678 | MN604929 | |
| BRIP 69578 | Vicia cracca | Australia, NSW, Cowra | MN567679 | MN604930 | |
| Didymella pomorum | CBS 539.66 | Polygonum tataricum | The Netherlands | FJ427056 | KT389618 |
| Didymella prolaticolla | CBS 126182 T | Soil | Namibia | MN973533 | MT018157 |
| Didymella prosopidis | CBS 136414 T | Prosopis sp. | South Africa | KF777180 | MT018149 |
| BRIP 69579 | Gastrolobium celsianum | Australia, SA, Adelaide | MN5676780 | MN604931 | |
| Didymella protuberans | CBS 381.96 T | Lycium halifolium | The Netherlands | GU237853 | KT389620 |
| Didymella sancta | CBS 281.83 T | Ailanthus altissima | South Africa | FJ427063 | KT389623 |
| Didymella sinensis | CGMCC 3.18348 T | Cerasus pseudocerasus | China | KY742085 | MT018127 |
| Didymella subglobispora | CBS 364.91 T | Ananas sativus | MN973531 | MT018153 | |
| Didymella subglomerata | CBS 110.92 | Triticum sp. | USA, North Dakota | FJ427080 | KT389626 |
| Epicoccum brahmansense | CBS 990.95 T | Soil | Papua New Guinea | MN973513 | MT018119 |
| Epicoccum brasiliense | CBS 120105 T | Amaranthus sp. | Brazil | GU237760 | KT389627 |
| Epicoccum camelliae | CGMCC 3.18343 T | Camellia sinensis | China | KY742091 | KY742170 |
| Epicoccum catenisporum | CBS 181.80 T | Oryza sativa | Guinea-Bissau | FJ427069 | LT623253 |
| Epicoccum dendrobii | CGMCC 3.18359 T | Dendrobium fimbriatum | China | KY742093 | MT018084 |
| Epicoccum dickmanii | CBS 124671 T | Acropora Formosa | Australia | MN973509 | MT018113 |
| Epicoccum djirangnandiri sp. nov. | BRIP 69585 T | Swainsona galegifolia | Australia, NSW, Mount Annan | MN567673 | MN604924 |
| Epicoccum draconis | CBS 186.83 | Dracaena sp. | Rwanda | GU237795 | KT389628 |
| Epicoccum duchesneae | CGMCC 3.18345 T | Duchesnea indica | China | KY742095 | MT018115 |
| Epicoccum henningsii | CBS 104.80 | Acacia mearnsii | Kenya | GU237731 | KT389629 |
| Epicoccum hordei | CGMCC 3.18360 T | Hordeum vulgare | Australia | KY742097 | MT018102 |
| Epicoccum huancayense | CBS 105.80 T | Solanum sp. | Peru | GU237732 | KT389630 |
| Epicoccum italicum | CGMCC 3.18361 T | Acca sellowiana | Italy | KY742099 | KY742172 |
| Epicoccum keratinophilum | UTHSC DI16-271 T | Homo sapiens | USA | LT592930 | LT593068 |
| Epicoccum latusicollum | CGMCC 3.18346 T | Sorghum bicolor | China | KY742101 | KY742174 |
| Epicoccum longiostiolatum | CBS 886.95 T | Stellaria sp. | Papua New Guinea | FJ427074 | MT018108 |
| Epicoccum mackenziei | MFLUCC 16-0335 T | Ononis spinose | Italy | KX698039 | KX698035 |
| Epicoccum mezzettii | CBS 173.38 T | Populus pulp | Italy | MN973496 | MT018095 |
| Epicoccum nigrum | CBS 173.73 T | Dactylis glomerata | USA | FJ426996 | KT389632 |
| Epicoccum ovisporum | CBS 180.80 T | Zea mays | South Africa | FJ427068 | LT623252 |
| Epicoccum phragmospora | CGMCC 3.19339 T | Saccharum officinarum | China | MN215619 | MN255460 |
| Epicoccum pimprinum | CBS 246.60 T | Soil | India | FJ427049 | MT018100 |
| Epicoccum plurivorum | CBS 558.81 T | Setaria sp. | New Zealand | GU237888 | KT389634 |
| Epicoccum pneumoniae | UTHSC DI16-257 T | Homo sapiens | USA | LT592927 | LT593065 |
| Epicoccum poaceicola | MFLUCC 15-0448 T | Poaceae | Thailand | KX965727 | KX898365 |
| Epicoccum poae | CGMCC 3.18363 T | Poa annua | USA | KY742113 | KY742182 |
| Epicoccum polychromum | CBS 141502 T | Paspalum dilinateum | France | MN973506 | MT018109 |
| Epicoccum proteae | CBS 114179 T | Protea compacta x Protea neriifolia | South Africa, Somerset West | JQ044433 | LT623251 |
| Epicoccum pseudokeratinophilum | MFLUCC 18-1593 T | Prunus avium | China | MH827002 | MH853659 |
| Epicoccum purpurascens | CBS 128906 | Soil | USA | MN973488 | MT018083 |
| Epicoccum sorghinum | CBS 179.80 | Sorghum bicolor | Puerto Rico | FJ427067 | KT389635 |
| Epicoccum tobaicum | CBS 384.36 T | Soil | Indonesia | MN973493 | MT018092 |
| Epicoccum variabile | CBS 119733 T | Coffea Arabica | Brazil | MN973501 | MT018103 |
| Epicoccum viticis | CGMCC 3.18344 T | Vitex negundo | China | KY742118 | KY742186 |
| Neoascochyta desmazieri (outgroup) | CBS 297.69 T | Lolium perenne | Germany, Hohenlieth | KT389508 | KT389644 |
| Neodidymelliopsis achlydis | CBS 256.77 T | Achlys triphylla | Canada, British Columbia, Vancouver Island | KT389531 | MT018293 |
| Neodidymelliopsis cannabis | CBS 234.37 | Cannabis sativa | Unknown | GU237804 | KP330403 |
| Neodidymelliopsis farokhinejadii | CBS 142853 | Conocarpus erectus | Iran | KY449009 | KY464922 |
| Neodidymelliopsis longicolla | CBS 382.96 T | Soil | Israel, En Avdat, Negev desert | KT389532 | MT018298 |
| Neodidymelliopsis moricola | MFLUCC 17-1063 | Morus alba | Russia | KY684939 | KY684943 |
| Neodidymelliopsis negundinis | JZB380011 | Acer negundo | Russia | MG564165 | MG564166 |
| Neodidymelliopsis polemonii | CBS 109181 T | Polemonium caeruleum | The Netherlands | GU237746 | KP330427 |
| Neodidymelliopsis ranunculi | CBS 286.72 | Citrus limonium | Italy | MN973612 | MT018294 |
| Neodidymelliopsis tillae | CBS 519.95 T | Tilia sp. | Italy | MN973610 | MT018287 |
| Neodidymelliopsis tinkyukuku sp. nov. | BRIP 69592 T | Hardenbergia violacea | Australia, SA, Clare | MN5676781 | MN604932 |
| Neodidymelliopsis xanthina | CBS 383.68 T | Delphinium sp. | The Netherlands, Baarn | GU237855 | KP330431 |
| Nothophoma acaciae | CBS 143404 T | Acacia melanoxylon | Australia | MG386056 | MG386144 |
| Nothophoma anigozanthi | CBS 381.91 T | Anigozanthus maugleisii | The Netherlands | GU237852 | KT389655 |
| Nothophoma arachidis-hypogaeae | CBS 125.93 | Arachis hypogaea | India, Madras | GU237771 | KT389656 |
| Nothophoma brennandiae | CBS 145912 T | Soil | The Netherlands | MN823579 | MN824604 |
| Nothophoma garlbiwalawarda sp. nov. | BRIP 69580 | Senna artemisioides | Australia, SA, Adelaide | MN5676782 | MN604933 |
| BRIP 69586 | Senna artemisioides | Australia, SA, Berri | MN5676783 | MN604934 | |
| Nothophoma garlbiwalawarda sp. nov. | BRIP 69587 | Senna artemisioides | Australia, SA, Berri | MN5676784 | MN604935 |
| BRIP 69594 | Senna artemisioides | Australia, SA, Kimba | MN5676785 | MN604936 | |
| BRIP 69595 T | Senna artemisioides | Australia, SA, Wudinna | MN5676786 | MN604937 | |
| Nothophoma eucalyptigena | CBS 142535 T | Eucalyptus sp. | Australia | KY979771 | KY979852 |
| Nothophoma gossypiicola | CBS 377.67 | Gossypium sp. | USA, Texas | GU237845 | KT389658 |
| Nothophoma infossa | CBS 123395 T | Fraxinus pennsylvanica | Argentina, Buenos Aires Province, La Plata | FJ427025 | KT389659 |
| Nothophoma infuscata | CBS 121931 T | Acacia longifolia | New Zealand | MN973559 | MN973559 |
| Nothophoma macrospora | UTHSC DI16-199 T | Homo sapiens | USA, Arizona | LN880536 | LT593073 |
| Nothophoma naiawu sp. nov. | BRIP 69583 T | Senna artemisioides | Australia, SA, Blanchetown | MN5676787 | MN604938 |
| BRIP 69582 T | Senna artemisioides | Australia, SA, Blanchetown | MN5676788 | MN604939 | |
| Nothophoma nullicana | CPC 32330 T | Acacia falciformis | Australia | NR_156665 | MG386143 |
| Nothophoma pruni | MFLUCC 18-1600 | Prunus avium | China | MH827005 | MH853662 |
| Nothophoma quercina | CBS 633.92 | Microsphaera alphitoides from Quercus sp. | Ukraine | GU237900 | KT389657 |
| Nothophoma variabilis | UTHSC DI16-285 T | Homo sapiens | USA | LT592939 | LT593078 |
1BRIP, Queensland Plant Pathology Herbarium, Brisbane, QLD, Australia; CBS, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; CGMCC, China General Microbiological Culture Collection, Beijing, China; MFLUCC, Mae Fah Luang University Culture Collection, Chiang Rai, Thailand; UTHSC, Fungus Testing Laboratory at the University of Texas Health Science Center, San Antonio, Texas, USA. 2NSW, New South Wales; SA, South Australia; VIC, Victoria; WA, Western Australia. 3ITS, internal transcribed spacer region; rpb2, RNA polymerase II second subunit. T ex-type strain.